Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01949 ATGGACTTCGATCACCACCTCACGGAGCTTTCCGCCGCCTCGCCATGCATTCCTTCCGGCGAGGACTTCCATTTCTACTACAAATTCCGGGAGTTCCGGCGCCCGATCGAGGAAATCGCGAGGAGGACGCAGTCGATGCTAGACAGAATCGGTTCCGCGGAGAGTATTTGGGGCAGAGGCTCGAGATTTCCCGGCGACGTCGACGACGGGTACGAGTGGCTCGTGAACGCGAACGACGACGTTTTGGAGCTGGTGGAGGAGCTGGTGGATGAGTTGCGGATGTTCAAGAAGGACGAGGGAGAGGAATGTGACGGGGCGAATCCGAAGGTGCCGTTTCATATACCGACTATTAAGAAGCCGCAGTACGCGTACAACATTGTGGTTGATAATGCAAACCAGCCTTTTGAGCATGTTTTGTTGGAGAAGAGTGATGATGGTCAGCGGTATATTCATCCACTGGAGAAACTATCTGTTTTGGATTTTGTTGATAAAGAAAATCTCGAGAATCTTGTGCCAGTAAAGCCTCCCTCAATAGAATGCACCCCTTTCAAGCTTGTGGAGGACATCAAAGGATTGAAGGAGGTGGCTGCTAAGTTGTCTTCAGTTAATGAATTTGCGGTGGATTTGGAACATAATCATTATCGGTCTTTCCAAGGTTTGACTTGCTTGATGCAAATCTCAACCAGGACTGAAGATTTTATTATAGATACTCTGAAGGTCCGCAATAATGTTGGGCCATACTTGAGGGAAGTCTTCAAGGACCCTACCAAGAAGAAGGTCTTGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTACGTTTGTAATATGTTCGATACTGGCCAGGCTTCAAGAGTGTTAAAGTTGGAGAGATATAGTCTGCAATATCTTTTGCAACACTTTTGTGGGGTTACTGCAAACAAGGAATACCAGAGTGCAGATTGGAGATTACGCCCTCTTCCTGATGTGATGCTAAGATATGGCAGAGAAGATACACACTATCTGCTTTATATATATGATTTAATGAGGATCAAATTATTTGCGTTGTCTAAGGAATCTGAAGGTTCTAAGGAGTCCGAAGGTTGTGATAATCCTCTACTGGAGGTTTACAAGCGCAGTTATGATGTCTGCATGCAGCTATATGAGAAAGAGCTGCTGACTGAAGACTCGTACCTTCATATATATGGGTTGCGAGGGGCTGGTTTTAATGCTCAGCAGCTTGCCGTTGTTTCAGGGCTTTGGGAATGGCGTGACGGTCTTGCTCGTGCAGACGACGAGGGTCCTGGCTATGTATTGCCAAATAGAATTATTCTTGAAATCGCTAAGCAGATGCCTGTCACTATAAGCAATCTACGGCGAATAGTAGGAAGGACAAAGCACCCATATGTTGAGCGCAGCCTTGATGTCATTGTCAACATTGTCAGACATTCTATGCAAAATGCTGCTGCCTTTGAAGAGGCTGCACTACGTTTGAAAGAAGAACATGCAGCAAGTTTGTTAAAGGTAGTACCCGTTGAGGATGGAACTGAAGTACCTCAGACACTAAACTTAAAGGTTGGATGTGCACCAACAGGAAGCATTGGAATTGAAAATGATACCTCAGAAAATTTGTTTTCTTATGACCTGGAGGAGGAAAGTTATCAGCATCAAGTTAAAGATGGACTAGCAGAAGTTAAATCCGATTGTCTCACTTCAGATCTCCCAAGGGTCAGTCCCACTATTCCAGAGAAGAATCGGGATGATGCAAATGTTATTGCACTCTCTACAGCGAAGGGCAATGGAGAGGTGCTAAAAATGCCTACTGGTGCTTTTGATGCGCCACTGGGCAATTCTGCTTCAGAATGGAAGTCTGATCCTAATAAAAAGGTCAAGAAGGAGATCAAGCTAGAACAGATTAAATCGTCAGTCAATCTTCCACCCCACTTATATTTGGGCAACAGTGAGAAATCAAAACTAGTTGTAGAAACTTCAAGTGTAGCATCTGAAACATCAGACCCACAGAAGAAACCTGTTTCAGGTTCAGTTTCTACCTCCAGCCCCATTGGGATTGTAATGGTAGTCTCTGATTCAGACTCGGAGGATATGCTGCAGAATAAGCTAGACCCAGGGGAAAATTCTCTCGTGCCCAGGAAAAGAAGATGA 2157 0.4525 MDFDHHLTELSAASPCIPSGEDFHFYYKFREFRRPIEEIARRTQSMLDRIGSAESIWGRGSRFPGDVDDGYEWLVNANDDVLELVEELVDELRMFKKDEGEECDGANPKVPFHIPTIKKPQYAYNIVVDNANQPFEHVLLEKSDDGQRYIHPLEKLSVLDFVDKENLENLVPVKPPSIECTPFKLVEDIKGLKEVAAKLSSVNEFAVDLEHNHYRSFQGLTCLMQISTRTEDFIIDTLKVRNNVGPYLREVFKDPTKKKVLHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKLERYSLQYLLQHFCGVTANKEYQSADWRLRPLPDVMLRYGREDTHYLLYIYDLMRIKLFALSKESEGSKESEGCDNPLLEVYKRSYDVCMQLYEKELLTEDSYLHIYGLRGAGFNAQQLAVVSGLWEWRDGLARADDEGPGYVLPNRIILEIAKQMPVTISNLRRIVGRTKHPYVERSLDVIVNIVRHSMQNAAAFEEAALRLKEEHAASLLKVVPVEDGTEVPQTLNLKVGCAPTGSIGIENDTSENLFSYDLEEESYQHQVKDGLAEVKSDCLTSDLPRVSPTIPEKNRDDANVIALSTAKGNGEVLKMPTGAFDAPLGNSASEWKSDPNKKVKKEIKLEQIKSSVNLPPHLYLGNSEKSKLVVETSSVASETSDPQKKPVSGSVSTSSPIGIVMVVSDSDSEDMLQNKLDPGENSLVPRKRR 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01949 718 SMART 35exoneu6 183 352 IPR002562 GO:0003676|GO:0006139|GO:0008408
Pumo5g01949 718 Pfam PMC2NT (NUC016) domain 11 92 IPR012588 GO:0000176|GO:0006396
Pumo5g01949 718 MobiDBLite consensus disorder prediction 660 718 - -
Pumo5g01949 718 Pfam HRDC domain 411 465 IPR002121 GO:0003676
Pumo5g01949 718 ProSiteProfiles HRDC domain profile. 408 489 IPR002121 GO:0003676
Pumo5g01949 718 SUPERFAMILY HRDC-like 393 484 IPR010997 GO:0000166|GO:0044237
Pumo5g01949 718 SMART hrdc7 408 488 IPR002121 GO:0003676
Pumo5g01949 718 Pfam 3'-5' exonuclease 185 348 IPR002562 GO:0003676|GO:0006139|GO:0008408
Pumo5g01949 718 FunFam Protein RRP6-like 2 isoform A 116 393 - -
Pumo5g01949 718 Gene3D - 111 396 IPR036397 GO:0003676
Pumo5g01949 718 FunFam Putative exosome component 10 395 491 - -
Pumo5g01949 718 CDD Rrp6p_like_exo 179 377 - -
Pumo5g01949 718 MobiDBLite consensus disorder prediction 660 690 - -
Pumo5g01949 718 SUPERFAMILY Ribonuclease H-like 117 376 IPR012337 -
Pumo5g01949 718 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 8 631 IPR045092 GO:0000175|GO:0000467
Pumo5g01949 718 Gene3D HRDC domain 397 491 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01949 Pumo-Chr5 54894068 54908225 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01949 K12591 - gmx:100804872 1069.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01949 5 54894068 54908225 Pumo5g01949 5 54894068 54908225 ECH