Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01943 ATGTATCTCCCTCGCCACATCCTCACCAGACTCTCCCCTTACCGCCGCCACTTCTCCCACTCCGCCGCCGCCGTCGTCCTCCGCCCCCCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCCCCTCTCCTACCTCGAAGGCTTCCCCCGCCCCGATCCCAAGCACGACGAAACAATCCTCGCCATCCCCCGCTCCGACTCCGGCAAGAACATCTCCGCCAAGGAGCGCCGCGCCGGCCGCGTCCCGAGCATCGTCTTCGAGCAGGAAGACGGCCAGCACGGCGGCAACAAACGCCTCATCTCCGTCCGCACCGACCAGATCAGAAAACTCGTCAGCCACCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTTCCACCTCCAAATCCGCTCCCGCTTCGACTCCGAAAACGACGTCGTCGAGACCGTCCGCGTCTTGCCTCGCGCGATTCATTTGAAAGCTGGTACAGACGCGCCGTTGAATGTGACTTTTATTAGGGCTCCGTCGCACGCTTTGTTGAAGGTCGACGTTCCTCTTGTCTTCAGAGGAGAAGATATATCGCCTGGACTCAAGAAAGGTGCTTCCTTGAATACCATCAAAAGGACCGTCAAGTACTTATGCCCTGCTGACATTATTCCCCCATATATTGACGTTGATCTAAGTGAGTTGGATGTGGGCCAGAAGTTGGTCATGGGAGATCTCAAAGTTCATCCTGCTTTAAAACTTCTTCAGTCAAGAGAGGAAGCCGTTGTTAAAATTATGGGCCAAAGAGTTTCTGAACTACAAAAGAAAAAGTAA 792 0.5657 MYLPRHILTRLSPYRRHFSHSAAAVVLRPPEPEPEPEPEPLSYLEGFPRPDPKHDETILAIPRSDSGKNISAKERRAGRVPSIVFEQEDGQHGGNKRLISVRTDQIRKLVSHLGRSFFLSRLFHLQIRSRFDSENDVVETVRVLPRAIHLKAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDISPGLKKGASLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKLVMGDLKVHPALKLLQSREEAVVKIMGQRVSELQKKK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01943 263 SUPERFAMILY Ribosomal protein L25-like 57 258 IPR011035 GO:0006412
Pumo5g01943 263 Gene3D Ribosomal protein L25, beta domain 169 260 IPR037121 -
Pumo5g01943 263 Pfam Ribosomal protein TL5, C-terminal domain 171 253 IPR020057 -
Pumo5g01943 263 Gene3D Ribosomal Protein L25; Chain P 57 165 IPR020056 -
Pumo5g01943 263 FunFam 50S ribosomal protein L25 58 165 - -
Pumo5g01943 263 Pfam Ribosomal L25p family 60 162 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo5g01943 263 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 41 260 - -
Pumo5g01943 263 CDD Ribosomal_L25_TL5_CTC 57 164 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo5g01943 263 FunFam Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein 168 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01943 Pumo-Chr5 54543160 54552204 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01943 K02897 - gmx:100809143 468.774