Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01154 ATGGCCACACTCAAAAGCGTCTGCTTCAGAGGAACCACCTTTCCCGTTTGCCCCTCCAATGTCACCAATAATAGAAATACCAGGAGCTCATATTTGAGGCCTGCACAAGCAGCTGTGAAGCCCAGTTTCCATCTCCCAATGCGCAGTTTTGAGTTAAAAAATAGGACTTCTCCAGAGGACATAAAGTCTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATATGATGACTTGGTGAATATGCAGATTGGACAAGGGGCCGAAGGTGTTATTGTTGGTGGGACAACTGGTGAAGGCCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCTCATACAGTCAACTGTTTTGGTGGGAATATTAAGGTTATTGGAAATACTGGAAGCAACTCCACCAGGGAAGCAATTCATGCCACCGAGCAAGGTTTTGCTGTTGGAATGCATGCTGCCCTTCACATAAACCCTTACTATGGCAAAACCTCCTTGGATGGCATGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGGCCCACAATAATCTACAATGTGCCTTCACGGACCGGTCAAGACATTCCTCCGCATGTAATTCAAACCTTAGCTGAAAGTGCTAACCTGGCTGGTGTCAAGGAGTGTGTGGGAAATGACCGAATCAAGCAGTATACAGATGATGGAATTGTTGTGTGGAGTGGGAATGATGATCAATGCCATGATGCTAGATGGGGCTATGGAGCTACTGGAGTGATATCTGTTGCAAGCAACCTGGTTCCTGGTTTAATGCGAGAGCTCATGTTTGGCGGCGTAAACCCCACACTAAATTCTAAGCTCTTACCTCTGATTGACTGGCTCTTCCACATGCCAAACCCCATTGGTTTGAACACTGCTCTTGCTCAACTTGGGGTTGTCAGACCCGTTTTTCGGCTGCCATTTGTACCTCTCCCTGTGGAGAAAAGGATAGAATTTGCCAATTTGGTGAAGGAAATTGGTCGAGAGCATTTTGTTGGAAATAAAGATGTTGAGGTTCTTGATGACGATGACTTTTTCTTGGTCAGTCGTTATTAA 1092 0.4515 MATLKSVCFRGTTFPVCPSNVTNNRNTRSSYLRPAQAAVKPSFHLPMRSFELKNRTSPEDIKSLRLITAIKTPYLPDGRFDLEAYDDLVNMQIGQGAEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGNIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQTLAESANLAGVKECVGNDRIKQYTDDGIVVWSGNDDQCHDARWGYGATGVISVASNLVPGLMRELMFGGVNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPVEKRIEFANLVKEIGREHFVGNKDVEVLDDDDFFLVSRY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01154 363 ProSitePatterns Dihydrodipicolinate synthase signature 2. 192 222 IPR020625 GO:0016829
Pumo5g01154 363 SMART DHDPS_2 63 339 IPR002220 GO:0016829
Pumo5g01154 363 PRINTS Dihydrodipicolinate synthase signature 164 180 IPR002220 GO:0016829
Pumo5g01154 363 PRINTS Dihydrodipicolinate synthase signature 96 117 IPR002220 GO:0016829
Pumo5g01154 363 PRINTS Dihydrodipicolinate synthase signature 132 150 IPR002220 GO:0016829
Pumo5g01154 363 PRINTS Dihydrodipicolinate synthase signature 187 204 IPR002220 GO:0016829
Pumo5g01154 363 NCBIfam 4-hydroxy-tetrahydrodipicolinate synthase 66 336 IPR005263 GO:0008840|GO:0009089
Pumo5g01154 363 ProSitePatterns Dihydrodipicolinate synthase signature 1. 99 116 IPR020624 GO:0016829
Pumo5g01154 363 CDD DHDPS 65 335 IPR005263 GO:0008840|GO:0009089
Pumo5g01154 363 Gene3D Aldolase class I 58 363 IPR013785 -
Pumo5g01154 363 PANTHER DIHYDRODIPICOLINATE SYNTHASE 51 348 IPR002220 GO:0016829
Pumo5g01154 363 Pfam Dihydrodipicolinate synthetase family 64 337 IPR002220 GO:0016829
Pumo5g01154 363 SUPERFAMILY Aldolase 66 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01154 Pumo-Chr5 25855408 25859097 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01154 K01714 - gmx:100788930 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01154 5 25855408 25859097 Pumo5g01154 5 25855408 25859097 ECH
Pumo5g01154 5 25855408 25859097 Pumo7g01008 7 18661813 18662308 PCT