Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00902 ATGGCGGTGCCTCACTCCACCGCCGTGGTTCCTCCTCCTCCGTCCGCCGCCGCGCTGCCGTTGGAGGAAAGTCCGCCGGCCGGGAGCTCTCGGACGACGCCGGTCCGGTCCGGAAGACGGAACTGGAGTACCGCCGATGGCTCCGCCGCCGTTGTTAACGACGAAACCTGCTCCTGCTTCGCCGTCGTCTTCAGCTTTTGGTTCTTCGTGTCGATGACGATGATAATGGGGGTTTATGGGTCCACGACCATCGTACTTGGTCCAAAATCATCAATTGTTTTCCAACCAAGTCCCGTGTTCGTGCAATATATTAAGGTAGAAAACTTAAAGGCAAACCCTGGCCAAGGACCCATTCTTTATGGTACACATCAGTATCCCCCACTTGATGTTGTTACCACTTGGGGAGAAACTTGTAATGTGTCTCTTCCCTCTGGCGCACACAAGGCAAACTCTTTTTTTTTGTGTCTTCCACAGGAATGGAAATATTATCTGAATAGTGGGTCTGCAATAAATATTTCGTATCACGTGAGCTCTAGGAGCTCTTCTGCTTTCCTTATAATTGCAGAAGGGGACGAGGGCCTCACTCGGTGGATAGAGGACCCAACAGAACCTAATACAACTCTGTCATGGAATGTGATCCATGGAACTGGTATGATTACACAGGAAATATTCTGGTCGTCGAGCTATTATGTGGCATTGGGTAATTTGGATGAGGATGTGGAGGTGGCATTAAACCTCAGTGTAAGGGCCTTCTTGCATAATACAACGGATGCTTACTACAAATGTGCTCTTACCAATCATCCATGCAGTTTGAATCTTTTCTTTCCTGATGGAAGTGCAGCTGTCTTAGTTACTCCTGGTCCACAACAGAATGCATCCAATGATTGGTATGTCAAACTGTCCTATGGACCAAGATGGGTGACCTATATTTTTGGCATTGGTGGATTGACTTTGCTTGTGTTTTTCGCCTTCAACTTCTTGAACAAGCTTCAGTATGCTCAAGAAGATAGAGCAGGAGTTAGATCTGAGGGAACAGAACCTCAAAGAGCCCCTTTGCTTTCCCACAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTGCCACAAGATGAGGAGGATCTTGACTTTCTTCCTGGAGGTCCTGTTGATGGGAAGTTTTTAGGTGATGGTAAAACCAGTAATAATACACGGCGTCTTTGTGCTATTTGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCATGTGGACACTGTGTGGCTTGTTTTGCATGTGGAACTAGGATAGCAGAGGCAGCTGGCACTTGCCCTGTTTGTCGTAGGAACATGAAGAAGGTTAGGAAGATTTTCACTGTTTGA 1365 0.4711 MAVPHSTAVVPPPPSAAALPLEESPPAGSSRTTPVRSGRRNWSTADGSAAVVNDETCSCFAVVFSFWFFVSMTMIMGVYGSTTIVLGPKSSIVFQPSPVFVQYIKVENLKANPGQGPILYGTHQYPPLDVVTTWGETCNVSLPSGAHKANSFFLCLPQEWKYYLNSGSAINISYHVSSRSSSAFLIIAEGDEGLTRWIEDPTEPNTTLSWNVIHGTGMITQEIFWSSSYYVALGNLDEDVEVALNLSVRAFLHNTTDAYYKCALTNHPCSLNLFFPDGSAAVLVTPGPQQNASNDWYVKLSYGPRWVTYIFGIGGLTLLVFFAFNFLNKLQYAQEDRAGVRSEGTEPQRAPLLSHKDDDLSSWGSSYDSLPQDEEDLDFLPGGPVDGKFLGDGKTSNNTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEAAGTCPVCRRNMKKVRKIFTV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00902 454 FunFam E3 ubiquitin-protein ligase APD2 392 453 - -
Pumo5g00902 454 MobiDBLite consensus disorder prediction 338 365 - -
Pumo5g00902 454 MobiDBLite consensus disorder prediction 1 42 - -
Pumo5g00902 454 Pfam Domain of unknown function (DUF4793) 218 322 IPR032010 -
Pumo5g00902 454 Pfam Domain of unknown function (DUF4792) 158 194 IPR032008 -
Pumo5g00902 454 SUPERFAMILY RING/U-box 402 448 - -
Pumo5g00902 454 PANTHER OS05G0521000 PROTEIN 44 454 - -
Pumo5g00902 454 MobiDBLite consensus disorder prediction 26 42 - -
Pumo5g00902 454 ProSiteProfiles Zinc finger RING-type profile. 403 442 IPR001841 -
Pumo5g00902 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 453 IPR013083 -
Pumo5g00902 454 SMART ring_2 403 441 IPR001841 -
Pumo5g00902 454 Pfam Zinc finger, C3HC4 type (RING finger) 400 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00902 Pumo-Chr5 18817634 18822791 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00902 - - gmx:100791057 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00902 5 18817634 18822791 Pumo5g00902 5 18817634 18822791 ECH