Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00838 ATGAATTTCATATGGTTTGTTGAATCTGGTTCTATTTTTTCCAATTTGAGTTTGTGTCACTTGACAAGTATGTATACTAGTGGTTACACTGCTCTAGTTACAAACTTATCCCCAAGAGCAACAGAGGATGATGTGCGCAATTTTTTCACATATTGTGGTTTAATTGAGCATATTGAAATATTAAGATCTGGTGAAGATGCATCTACTGCATATGTGACTTATCGGGATGCTTATGCCCTGGAAACTGCATTATTGCTAAATGGATCAATGATATTGGACCAATGTATATTCATTTCACGCTATGAAGCTTACGTAAATGACTATGATAATTGGAGCAGTTATGCATCAAAGCCTAAAGATGGTATTACAACCTCACAAGATGTTCACATGGATAAGTTTGTTTCTTCCCCTGGAGAAGCACTGACTATGGCTCAGGTGGTTGTCAAAACAATGGTGGCTAAGGGATATGTGTTGGGCAAAGATGCATTTGTCATGGCAAAAGCTTTTGATGAATCTCATAATGTATCATCTACAGCAGCAACCAAGGTTGCTGAACTCAGCAACAAAATTGGGTTGACTGATACCATTAATTCAGGCATTGAAACTTTTAAGTCTGTGGATGAGAAGTATCGTGTCACAGACTTCACCAAATCAGCTGCAACAGTGACAGGGACAACAGCTATAGTTGTTGCATCAGTTACCGGAAAAGCCGCTGTGACAGCTGGAACTGCTATAGCCAACAGTAGCTACTTTGCCAAAGGAGCTCTTTGGGTTTCAGATATGTTGACACGTGCAGCCAAAGCAGCGGCTGATTTGGGTCAGAATGAAAAGAAATGA 837 0.3978 MNFIWFVESGSIFSNLSLCHLTSMYTSGYTALVTNLSPRATEDDVRNFFTYCGLIEHIEILRSGEDASTAYVTYRDAYALETALLLNGSMILDQCIFISRYEAYVNDYDNWSSYASKPKDGITTSQDVHMDKFVSSPGEALTMAQVVVKTMVAKGYVLGKDAFVMAKAFDESHNVSSTAATKVAELSNKIGLTDTINSGIETFKSVDEKYRVTDFTKSAATVTGTTAIVVASVTGKAAVTAGTAIANSSYFAKGALWVSDMLTRAAKAAADLGQNEKK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00838 278 Gene3D - 22 106 IPR012677 -
Pumo5g00838 278 SMART rrm1_1 30 99 IPR000504 GO:0003723
Pumo5g00838 278 SUPERFAMILY RNA-binding domain, RBD 18 103 IPR035979 GO:0003676
Pumo5g00838 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 103 IPR000504 GO:0003723
Pumo5g00838 278 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 29 276 - -
Pumo5g00838 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 95 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00838 Pumo-Chr5 16355095 16363125 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00838 - - gmx:100797381 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00838 5 16355095 16363125 Pumo5g00838 5 16355095 16363125 ECH