Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g00144 ATGGCATCCTCGTTGGAACCTGCCACCAAAGCCGCCACTAATTTGCGCCTCATACACTCTTTCCGCTTCTCTCGTAAACCCAACAACCTACGCTTTGCCACCAAGCCTGGTCATATGCTGTTATGCTCAAGGGTTAAGGCCCGATTAAATGAGGTTGCCCTTGATAGTTCCTCCAATGCTGCTACTCCTATCAAAGCTAAATCAAACGAGGAACCACCCGCAAAACCTTCAACCGAATTATCTTCTTCAGTCTTGGCAACTCAAGAATCGGTCTCTCAGTTTATTACTCAAGTTGCAAGTCTTGTCAAGCTTGTTGATTCAAGAGACATTGTGGAGTTGAAGCTGAAGCAGCATGACGTTGAAGTAACAATCAGGAAAAAGGAGGCTATGCCTCAACCATTACCTCCTCCTCAACCTGCGGTGGTGTATTCACCCCCTCCACCAGCCTTGCCACTGCCACCCGTCGCACCAGCATCTACTCCAGCACCTACGCTAGCTCGTCCAACCGCTGCACCAACTTCTCCCCCTGCCCTCAAGTCAGCTAAATCATCACTTCCGCCTCTTAAAAGCCCCATGGCAGGGACATTCTACCGAAGTCCTGCACCTGGTGAACCTCCCTTTGTGAAGGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATAGAAGCTGATCAGTCAGGAACTATAGTTGAAATCATTGCGGAAGATGGCAAGTCTGTAAGCGTTGACACTGCCCTTTATTCCCTGTCTAGTTACCAAAAATTAAAAGGTAAACAAACACAAAGGAAAAGAAAGAAAGAAAGAGGAACACAAACACAGTCACCAAAAAAAAAAAAAAATCCAAATCATCGATGGGGTAAATCTGGCGGTGTTTGGATTTTGCCGTTGCTCGTAGCATCGTGTCTGTTAACGGCGGCGACGGCGACGGCGACGGTGAGGGATTCGAATTCGACGACGATATACGACGAGCTTCGGGCGCAGGGGCTTCCGGTGGGGCTTCTTCCGAAGGGGATCGCGAAGTACTCGCTGAACGCTACGAGCGGGGAATTCGAGGTGTGGATGGAGGAACCGTGCAACGCGAAGTTCGAGAACGAGGTGCACTACGATTCCAACATAAAGGGTGTCCTAGGGTACGGTCGGATCGGGAAATTATCCGGTGTGTCGGCGCAGGAGCTCTTCCTGTGGTTCCCCGTTAAGGGCATTAGGGTCGATGTTCCCACCTCGGGCCTCATCCATTTCGATGTTGGTGTTGCCGATAAGCAATTCTCTTTGTCGTTATTTGAGGACCCTCCTGATTGTAACCCCCAGGTTAATGTTGGTGGTGGTGAGCGGAGGGCTGCTTGGTAG 1380 0.4964 MASSLEPATKAATNLRLIHSFRFSRKPNNLRFATKPGHMLLCSRVKARLNEVALDSSSNAATPIKAKSNEEPPAKPSTELSSSVLATQESVSQFITQVASLVKLVDSRDIVELKLKQHDVEVTIRKKEAMPQPLPPPQPAVVYSPPPPALPLPPVAPASTPAPTLARPTAAPTSPPALKSAKSSLPPLKSPMAGTFYRSPAPGEPPFVKVGDKVKKGQVVCIIEAMKLMNEIEADQSGTIVEIIAEDGKSVSVDTALYSLSSYQKLKGKQTQRKRKKERGTQTQSPKKKKNPNHRWGKSGGVWILPLLVASCLLTAATATATVRDSNSTTIYDELRAQGLPVGLLPKGIAKYSLNATSGEFEVWMEEPCNAKFENEVHYDSNIKGVLGYGRIGKLSGVSAQELFLWFPVKGIRVDVPTSGLIHFDVGVADKQFSLSLFEDPPDCNPQVNVGGGERRAAW 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g00144 459 Pfam Biotin-requiring enzyme 188 258 IPR000089 -
Pumo5g00144 459 Gene3D - 186 260 - -
Pumo5g00144 459 ProSiteProfiles Biotinyl/lipoyl domain profile. 185 261 IPR000089 -
Pumo5g00144 459 MobiDBLite consensus disorder prediction 266 297 - -
Pumo5g00144 459 FunFam Acetyl-CoA carboxylase biotin carboxyl carrier protein 179 261 - -
Pumo5g00144 459 NCBIfam acetyl-CoA carboxylase biotin carboxyl carrier protein 95 258 IPR001249 GO:0003989|GO:0006633|GO:0009317
Pumo5g00144 459 PRINTS Acetyl-CoA biotin carboxyl carrier protein signature 207 221 IPR001249 GO:0003989|GO:0006633|GO:0009317
Pumo5g00144 459 PRINTS Acetyl-CoA biotin carboxyl carrier protein signature 222 235 IPR001249 GO:0003989|GO:0006633|GO:0009317
Pumo5g00144 459 PRINTS Acetyl-CoA biotin carboxyl carrier protein signature 190 203 IPR001249 GO:0003989|GO:0006633|GO:0009317
Pumo5g00144 459 MobiDBLite consensus disorder prediction 152 185 - -
Pumo5g00144 459 Pfam Protein of unknown function, DUF538 332 439 IPR007493 -
Pumo5g00144 459 ProSitePatterns Biotin-requiring enzymes attachment site. 217 234 IPR001882 -
Pumo5g00144 459 CDD biotinyl_domain 188 257 - -
Pumo5g00144 459 Gene3D - 314 448 IPR036758 -
Pumo5g00144 459 SUPERFAMILY Single hybrid motif 187 259 IPR011053 -
Pumo5g00144 459 SUPERFAMILY At5g01610-like 303 445 IPR036758 -
Pumo5g00144 459 MobiDBLite consensus disorder prediction 56 82 - -
Pumo5g00144 459 FunFam Uncharacterized protein At3g07460 318 449 - -
Pumo5g00144 459 PANTHER T31J12.3 PROTEIN-RELATED 318 444 IPR007493 -
Pumo5g00144 459 MobiDBLite consensus disorder prediction 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g00144 Pumo-Chr5 4348678 4357856 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g00144 1 261 Acyl Lipid Metabolism Gene Families AT5G15530 48.921 5.23e-60 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g00144 - K02160 gmx:100778244 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g00144 5 4348678 4357856 Pumo5g00144 5 4348678 4357856 ECH