Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g04158 ATGGCAAAATCATTAGATCATTATTATTTATACGTTAAAGTACAATGCTGCGGTGACACCGGCATTGAATTTGTGCTTGAAAGTTGCATTACAAGTTTTGTGCTTCTAATTTTTGTCCCAACTAAGATTGAATGTGTTTATCCAGCGAAGGATGAGAAATGTTGTTCCACTCAGCTTATTGATGGAGATGGTACATTCAATGATGCCGGGATTGAAAACTTCATGAAAGAGGTTAAATTAAGTGAATGTGGGCTTTCCTATGCCGTAGTTTCTATTATGGGTCCACAAAGTAGTGGCAAGAGCACGCTCTTAAATAGTTTGTTCTGTACTAACTTCAGAGAGATGGATGCGACGTGCATTGTTTTCAGGTCTCAAACAACCAAAGGAATTTGGATGGCTAGATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTTGAAAAGCAGAGTGCTTTATTTGCTTTGGCTATTTCTGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGTCGTGAACAAGCTGCAAATAAGCCGCTTTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGCTCTTTGTCATACGTGATAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTGAGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGAGGCTCATAAGGAAACCCCATTAAGTGAATTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTTGAAGAAAAGGAAGAACAATTTAAGGAGCAGGTTGCCAACTTGAGGCAACGATTCTATCATTCTATCGCTCCAGGCGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCAGGCTTTTCTTTTAGTGCTAAGGAAATTTGGAAAATCATTAAGGAGAACAAGGATCTTGACCTTCCTGCACACAAGGTAATGGTTGCTACTGTACGATGTGAAGAAATTGCTAACGAGAAATATGACCTTTTTGCTACAAATAAGGACTGGTGTGAGTTGGAAGAGGCTGTGCAATCTGGCCCTGCTTCTGGATTTGGGAAAAAGCTCAATTCACTTCTTACCGCTTGTCTTTCAGAGTATGATGCTGAAGCCAATTATTTTGACGAAGGTGTGAGATCTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTTCAACTTGTCCAACCAGCATTCCAAATTGCACTGGGACATATAAGGTCTGGAATTTTGGATAAGTTCAAGGAAGCATTTGACAAGGCTTTGAGTGGAGGGGAAGGGTTTTCTTCTGTTGCTAATAAGTGCATAGAGTCTTATATGGCTCAGTTTGATGAAGGATGTGCAGATGTTGTTATTGAAATAGCAAACTGGGATACGTCTAAAGTGAGGGAGAAGCTACGACGTGATATTGATGCACATGTCGCATCTGTACGTGCATCTAAGATGTCAGAACTTATTTCATCATATGAGGAAAAAGTGAAGGAGGCCTTGTCTGCACCTGTTGAAACTCTATTGGATGGAGCTAATAGTGATACTTGGCCATCAATAAGGAAACTTCTTAATCGTGAGACTCAATCAGCTGTTTCTGGGTTCTCTGCTGAACTTATCAGATTTGATATGGATGAACAAACAAAAAAGATCATGATTGTGAGTTTAGAGAATTATGTAAAGGGTGTGATAGAAGCCAAGGCCAGGGAAGAAGCTGGCAGAGTTCTAATCCGTATGAAGGACAGGTTTATGACAATGTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGAAAAGAAGATATTCGAGCCATCACCAAGTCTGCCCGCTCTGCGTGCTTGAAGTTGCTGTCTGTAATGGCTGTAATTCGCTTGGATGATGATGATGACATTTATGATATCGAGAAAACATTAATAATTGCATTGGCAGATTCATCAAGCAGTTCTGCTAAAGATAAGAGCATCAAGGCAGTTGAGCCACTAGCTTCAAGCACTTGGGATCAGGTACCACCCTCTAAAACATTGATCACACCTGTCCAGTGCAAATCCTTGTGGAGGCAATTCAAGATGGAGACAGAATATAGTGAAGCCAACAATCGTAGCAGCAACTGGTTACCTCCACCATGGGCAATTGTTGCTTTGCTTATTCTTGGATTTAATGAATTTATGACACTTTTAAGAAATCCCTTGTATTTAGGTGTCATCTTCGTTGGCTATCTTCTCCTTAAAGCCCTATGGGTGCAGCTTGACATTAAGGGTGAATTTCGCAATGGAGCTCTTCCAGGAATCATCTCCTTGTCTAGCAAGTTTCTTCCAACTATCATGAACCTTATCAGAAAACTAGCAGAGGAGGGACAGGGACAGGGACCTGCAGCTAACAATCCTCGGAGAAATCCATCAAAAAGTAATCAAAGTGCTGTTCCTGCAGGTAGAGTTACCTCATCTAGTGCTTCATCCAGTGTAACTTCATCGGGCAGTGGAGCCGAGTATACGAGTGCATCAAAATATGAGTAG 2568 0.4097 MAKSLDHYYLYVKVQCCGDTGIEFVLESCITSFVLLIFVPTKIECVYPAKDEKCCSTQLIDGDGTFNDAGIENFMKEVKLSECGLSYAVVSIMGPQSSGKSTLLNSLFCTNFREMDATCIVFRSQTTKGIWMARCVGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPEAHKETPLSEFFIVEVVALSSFEEKEEQFKEQVANLRQRFYHSIAPGGLAGDRRGVVPASGFSFSAKEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYDLFATNKDWCELEEAVQSGPASGFGKKLNSLLTACLSEYDAEANYFDEGVRSAKQKQLQEKLFQLVQPAFQIALGHIRSGILDKFKEAFDKALSGGEGFSSVANKCIESYMAQFDEGCADVVIEIANWDTSKVREKLRRDIDAHVASVRASKMSELISSYEEKVKEALSAPVETLLDGANSDTWPSIRKLLNRETQSAVSGFSAELIRFDMDEQTKKIMIVSLENYVKGVIEAKAREEAGRVLIRMKDRFMTMFSHDSDSMPRIWTGKEDIRAITKSARSACLKLLSVMAVIRLDDDDDIYDIEKTLIIALADSSSSSAKDKSIKAVEPLASSTWDQVPPSKTLITPVQCKSLWRQFKMETEYSEANNRSSNWLPPPWAIVALLILGFNEFMTLLRNPLYLGVIFVGYLLLKALWVQLDIKGEFRNGALPGIISLSSKFLPTIMNLIRKLAEEGQGQGPAANNPRRNPSKSNQSAVPAGRVTSSSASSSVTSSGSGAEYTSASKYE 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g04158 855 Gene3D - 61 321 IPR027417 -
Pumo4g04158 855 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 65 322 - -
Pumo4g04158 855 MobiDBLite consensus disorder prediction 803 855 - -
Pumo4g04158 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 298 IPR027417 -
Pumo4g04158 855 CDD GBP 83 291 - -
Pumo4g04158 855 MobiDBLite consensus disorder prediction 809 855 - -
Pumo4g04158 855 Coils Coil 267 287 - -
Pumo4g04158 855 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 84 301 IPR030386 GO:0005525
Pumo4g04158 855 PANTHER PROTEIN SEY1 52 827 IPR008803 -
Pumo4g04158 855 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 93 330 - -
Pumo4g04158 855 Pfam Sey1 three-helix bundle domain 372 802 IPR046758 -
Pumo4g04158 855 Hamap Protein SEY1 [SEY1]. 56 804 IPR008803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g04158 Pumo-Chr4 82272349 82286099 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g04158 K22698 - gmx:100797516 1420.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g04158 4 82272349 82286099 Pumo7g00343 7 4481361 4490851 PCT