Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03653 ATGGCGACTTTGGATTCCGACGTGACAATGGTTCCGGCCGGCGAGCCCTCCAGCAGCGCCGGCCCTTCTTCTTCCACCAAGAAGCCGAAGCGATTCGAGATCAAAAAGTGGAATGCCGTTTCTCTCTGGGCTTGGGATATTGTTGTGGATAATTGCGCTATCTGCCGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGTGCCACTAGCGAGGAATGCACCGTAGCTTGGGGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAG 357 0.5154 MATLDSDVTMVPAGEPSSSAGPSSSTKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03653 118 ProSiteProfiles Zinc finger RING-type profile. 63 108 IPR001841 -
Pumo4g03653 118 Pfam RING-H2 zinc finger domain 50 108 IPR024766 GO:0008270
Pumo4g03653 118 MobiDBLite consensus disorder prediction 1 29 - -
Pumo4g03653 118 CDD mRING-H2-C3H2C2D_RBX1 50 111 - -
Pumo4g03653 118 MobiDBLite consensus disorder prediction 12 26 - -
Pumo4g03653 118 FunFam E3 ubiquitin-protein ligase RBX1 19 118 - -
Pumo4g03653 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 118 IPR013083 -
Pumo4g03653 118 SUPERFAMILY RING/U-box 30 115 - -
Pumo4g03653 118 PANTHER RING BOX 31 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03653 Pumo-Chr4 75796279 75798740 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03653 K03868 - gmx:100526919 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03653 4 75796279 75798740 Pumo11g01193 11 41279243 41281551 PCT