Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03466 ATGAGCAAAGCCCTCGGAGAAGACGAAGACGACGAAGAACAAGAACAAGAACAGGACCACGATTGTTTCTACGACTCACACGACCGTTTACTCTCTCTTTCTTCCTCCTGCTCCTGCTCCAACTCCAACTCCGACAACGAAAACGACGCCGAAGACCGCCAAAACGACACCCTCCCCAATCTCACCAACTACGACATATGGATCTCCCAACCCTCCTCCGTTTCGGAACGCCGCACGCGCCTTTTACTTTCCCTCGGCCTCTCTTCCCTCACGCGCCCAAACCCAAACCCTCACGATCGCAACTCCCCTCTCCGATCCAAATCCGACACCGCCGCCGCCGCCGCCGCCACCTCCTCCGTCGCGCCAAACCCTAACAAGCCACCTAATCCGAAACCACCACCACCTCCTCCTCCTCCTCCGATTGAAGAGCTGTGCACGATTCGAGATCTCGATAACGGGAAGGAGTTCGTGGTGAACGAATTGGAGAATCTGCGCGAGGTTGCGACGGGGCGGCAATTGACGATGGAGGAGTTCGAGATGACGGTGGTGGGGCACTCCCCCATCGTGCAGGAACTGATGAGGAGACAGAATGTTGAAGAGGCGAACGTTGATTCCAATGTGAGTGGTTCCAAGGCCAAGAAGAAAGGGACGGGGTGGCTGAAGAGTATCAAGAGCGTGGCGAGTTCCATGGCCGGGTATAGGGATCGCCGGAGTAGTGATGAGAGGGATACCTCGTCGGAGAAGGGAGGGAGACGGTCGAGCTCCGCCACCGACGACAGCCAGGACGGCGCGTTTCACGGGCCGGAGAGGGTGAGGGTGAAGCAGTATGGGAAGAGTTGCAAGGAGTTTACTGCTTTGTATAAGAGTCAGGAGATTCAGGCGCATAGTGGGAGTATTTGGAGCATTAAGTTTAGTTGGGATGGGAAGTATTTGGCGAGTGCTGGGGAGGATTGTGTGATTCATGTGTGGCAGGTGGTGGAGGGGGAGAAGAAGGGGGAGCTGTTGTTGTTGGATAGGGAGAAGGGGGAGGATGGGAATGTGAATATGTTTTTGGTGGTGAATGGGTCGCCGGAGCCCACGGGGGCAGCGGGGTTGCTGTCGCCGCTCTGGGGGGATGGGGAGAGGAAGAGGAAGGGGAGGTCCAGTGTGAGTAGGAAGTCCTTGAGCTTGGACCAGTTTGTCATGCCGCAGACCTTGTTTGCGCTTACTGACAAACCCGTTTGCTCCTTTCAGGGACATCTCCATGATGTGCTTGATCTCTCATGGTCCAAAAATCAGCACTTGCTCTCATCTTCAATGGACAAAACTGTGCGGCTGTGGCATCTGTCTAGCAAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGGCTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGTGGGTCCAAGGGTGCACTGGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCACATCACAAGAAAATTACTGGTTTCCAGGTACTGTAATGAGCTACTGCTGTGCTTTATGAGATAA 1710 0.5216 MSKALGEDEDDEEQEQEQDHDCFYDSHDRLLSLSSSCSCSNSNSDNENDAEDRQNDTLPNLTNYDIWISQPSSVSERRTRLLLSLGLSSLTRPNPNPHDRNSPLRSKSDTAAAAAATSSVAPNPNKPPNPKPPPPPPPPPIEELCTIRDLDNGKEFVVNELENLREVATGRQLTMEEFEMTVVGHSPIVQELMRRQNVEEANVDSNVSGSKAKKKGTGWLKSIKSVASSMAGYRDRRSSDERDTSSEKGGRRSSSATDDSQDGAFHGPERVRVKQYGKSCKEFTALYKSQEIQAHSGSIWSIKFSWDGKYLASAGEDCVIHVWQVVEGEKKGELLLLDREKGEDGNVNMFLVVNGSPEPTGAAGLLSPLWGDGERKRKGRSSVSRKSLSLDQFVMPQTLFALTDKPVCSFQGHLHDVLDLSWSKNQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWADLHEMVTAACYTPDGQVGPRVHWLVHTRVAAIYIIHLKISCNRKVRSICRTRKRNHITRKLLVSRYCNELLLCFMR 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03466 569 MobiDBLite consensus disorder prediction 234 255 - -
Pumo4g03466 569 MobiDBLite consensus disorder prediction 29 45 - -
Pumo4g03466 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 450 484 - -
Pumo4g03466 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 484 IPR001680 GO:0005515
Pumo4g03466 569 MobiDBLite consensus disorder prediction 230 271 - -
Pumo4g03466 569 PANTHER WD REPEAT DOMAIN 44 13 510 IPR040324 -
Pumo4g03466 569 SUPERFAMILY WD40 repeat-like 287 509 IPR036322 GO:0005515
Pumo4g03466 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
Pumo4g03466 569 Gene3D - 401 514 IPR015943 GO:0005515
Pumo4g03466 569 MobiDBLite consensus disorder prediction 1 58 - -
Pumo4g03466 569 MobiDBLite consensus disorder prediction 88 122 - -
Pumo4g03466 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 325 - -
Pumo4g03466 569 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 450 IPR001680 GO:0005515
Pumo4g03466 569 MobiDBLite consensus disorder prediction 88 142 - -
Pumo4g03466 569 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 410 444 - -
Pumo4g03466 569 MobiDBLite consensus disorder prediction 123 142 - -
Pumo4g03466 569 Gene3D - 255 350 IPR015943 GO:0005515
Pumo4g03466 569 SMART WD40_4 444 483 IPR001680 GO:0005515
Pumo4g03466 569 SMART WD40_4 285 324 IPR001680 GO:0005515
Pumo4g03466 569 SMART WD40_4 403 441 IPR001680 GO:0005515
Pumo4g03466 569 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Pumo4g03466 569 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Pumo4g03466 569 PRINTS G protein beta WD-40 repeat signature 470 484 IPR020472 -
Pumo4g03466 569 FunFam Transducin/WD40 repeat-like superfamily protein 250 356 - -
Pumo4g03466 569 Pfam WD domain, G-beta repeat 405 440 IPR001680 GO:0005515
Pumo4g03466 569 Pfam WD domain, G-beta repeat 291 323 IPR001680 GO:0005515
Pumo4g03466 569 Pfam WD domain, G-beta repeat 446 483 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03466 Pumo-Chr4 72611285 72615897 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03466 K20241 - gmx:100815065 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03466 4 72611285 72615897 Pumo4g03466 4 72611285 72615897 ECH