Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03347 ATGCGTGTTATTCTCGCTTCAAACCGTGGAACCGTCATGGAGCTTGGAATCACTCCCATTGTGACTTCTGGGCTAGTAATGCAACTTCTGGCTGGGTCAAAGATCATTGAAGTGGACAACAATGTACGAGAGGATCGAGCCCTATTAAACGGAGCACAGAAGCTACTTGGTATTTTGATAGCTGTTGGTGAGGCGGTTGCCTATGTTCTTTCTGGGATGTATGGTAGTGTGGGGCAACTTGGAGTAGGAAATGCCATCCTCATCATCATCCAGCTCTGTTTTGCGGGTATAATTGTGATATGTCTAGATGAGCTTCTTCAAAAAGGATATGGTCTGGGGTCTGGAATTTCCCTATTCATAGCAACTAATATCTGTGAAAACATTATATGGAAGGCATTTAGTCCGACCACCATTAATAGTGGACGTGGAGCTGAATTTGAAGGTGCTGTTATTGCTCTGTTCCATTTGTTGATAACTAGAACAGACAAGGTCCGTGCTCTTCGTGAGGCATTTTACCGGCAGAATCTTCCCAATGTGACAAATTTGCTTGCTACTGTCTTGATCTTCCTAATTGTGATATACTTCCAAGGTTTCCGTGTGGTCTTGCCTGTAAGGTCAAAGAATGCTCGTGGACAGCAGGGTTCATATCCAATCAAATTGTTTTATACCTCCAACATGCCCATCATTCTTCAGTCTGCCCTTGTTTCCAATCTCTACTTCATCTCCCAGCTGCTCCACCGTAAGTACAGCGGAAACTTCTTTGTAGATCTATTAGGAAAATGGAAGGACTCTGAATATGGAGGTGGTCACTCTGTTCCTGTTGGTGGTATTGCATACTATATCACTGCACCATCTAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCTCTGTTCTATCTTGTGTTTATGCTTTCAGCCTGTGCCTTGTTCTCTAAAACATGGATTGAAGTCTCTGGTTCATCTGCTAGAGATGTTGCCAAGCAGCTGAAGGAACAACAAATGGTAATGCCTGGACACCGCGAGTCAAACTTGCAGAAAGAGCTGAACCGATACATTCCCACCGCGGCAGCATTTGGAGGCATATGTATCGGTGCCCTGACGGTGTTGGCAGATTTCATGGGGGCCATTGGATCAGGAACAGGAATATTGCTTGCAGTAACGATCATCTATCAGTACTTTGAGACATTTGAGAAGGAGAGAGCTAGCGAGCTTGGCTTCGTTGGTTTCTAA 1233 0.4469 MRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVDLLGKWKDSEYGGGHSVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFVGF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03347 410 FunFam Transport Sec61 subunit alpha isoform 2 1 408 - -
Pumo4g03347 410 ProSitePatterns Protein secY signature 1. 11 30 IPR030659 -
Pumo4g03347 410 PIRSF SecY_Sec61alpha 2 405 IPR002208 GO:0015031|GO:0016020
Pumo4g03347 410 Pfam SecY 11 393 IPR002208 GO:0015031|GO:0016020
Pumo4g03347 410 SUPERFAMILY Preprotein translocase SecY subunit 2 400 IPR023201 -
Pumo4g03347 410 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 1 405 IPR002208 GO:0015031|GO:0016020
Pumo4g03347 410 PRINTS Preprotein translocase SecY subunit signature 109 132 - -
Pumo4g03347 410 PRINTS Preprotein translocase SecY subunit signature 10 30 - -
Pumo4g03347 410 Gene3D SecY subunit domain 1 408 IPR023201 -
Pumo4g03347 410 NCBIfam preprotein translocase subunit SecY 1 401 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03347 Pumo-Chr4 70762902 70766979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03347 1 410 Miscellaneous Gene Families AT2G34250 91.951 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03347 K10956 - gmx:100809703 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03347 4 70762902 70766979 Pumo4g03347 4 70762902 70766979 ECH