Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03228 ATGGTGGCCGGGGCTGAAAAGAAGGGGAAGTCGTTTGGTTTGGGGTGTGAACCTGTGGTGGGATCATTGATTCCAGCGAAGAAGGGGGATTACAGAGTTACCAATCGCCTCCAAGAGGGAAAGCGCCCTCTATACGGCGTCGTTTTCAACTTCCTCGACTCTCGCTACACCAAAGTTTTCGCCACTGTTGGTGGCAACAGGGTTACTGTTTATCATTGCCTTGATGAAGGGGTTATTGCTGTTTTGCAATCTTATGTGGATGAGGATAAGGATGAGTCTTTTTACACCGTGGGTTGGGCATGCAATGTTGATGGGACCCCACTTGTTGTGGCTGGAGGACTCAAGGGGATAATCCGAGTCATTGATTGTGGCAGTGAGAAGATACAGAAGAGTTTGGTTGGCCATGGAGACTCCATAAATGAAGTCAGAGCTCAAACATCAAAGCCATCACTTGTGGTATCTGCAAGCAAAGATGAATCTATCCGGTTATGGAATATTCATACTGGAATATGCATTTTGATATTTGCTGGAGCTGGGGGACATCGTAATGAAGTCTTAAGTGTTGATTTTCATCCATTGGATATGTATCGTATTTGTAGTTGTGGCATGGATAATACTGTAAAAATATGGTCTATGAAGGAGTTCTGGACATATGTAGAAAAATCATTCACGTGGACAGATCTTCCTTCTAAGTTTCCAACAAAATTTGTCCAGTTTCCTGTATACAATGCTTCAGTTCATATTAATTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTCTCAAAGAGTGTTGATAATGAAATTATCTTGTGGGAACCTGTAGTGAAGGAACAAACTCCAGGGGAGGGTGTAGTTGACGTTCTTCAGAAATACCCTATTCCCGAATGTGATATCTGGTTCATCAAGTTTTCTTGTGACTTCCATTTCAACATAGCTGCAGTAGGTAACAGGGAAGGGAAGATTTTTGTTTGGGAATTGCAGTCAAGTCCTCCCGTACTTGCTACAAGGTTGTCACATCCTCAATCAAAATCTCCAATCAGGCAGACTGCTACATCCTTTGATGGAAGAACTATATTGTGTTGCTGTGAGGATGGGACAATATGGCGCTGGGATGATGTTTCAAAACCCTCAACCTAA 1143 0.4287 MVAGAEKKGKSFGLGCEPVVGSLIPAKKGDYRVTNRLQEGKRPLYGVVFNFLDSRYTKVFATVGGNRVTVYHCLDEGVIAVLQSYVDEDKDESFYTVGWACNVDGTPLVVAGGLKGIIRVIDCGSEKIQKSLVGHGDSINEVRAQTSKPSLVVSASKDESIRLWNIHTGICILIFAGAGGHRNEVLSVDFHPLDMYRICSCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKFVQFPVYNASVHINYVDCNRWLGDFILSKSVDNEIILWEPVVKEQTPGEGVVDVLQKYPIPECDIWFIKFSCDFHFNIAAVGNREGKIFVWELQSSPPVLATRLSHPQSKSPIRQTATSFDGRTILCCCEDGTIWRWDDVSKPST 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03228 380 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Pumo4g03228 380 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Pumo4g03228 380 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Pumo4g03228 380 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 213 IPR001680 GO:0005515
Pumo4g03228 380 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 169 - -
Pumo4g03228 380 Pfam WD domain, G-beta repeat 127 165 IPR001680 GO:0005515
Pumo4g03228 380 Pfam WD domain, G-beta repeat 179 211 IPR001680 GO:0005515
Pumo4g03228 380 SUPERFAMILY WD40 repeat-like 36 373 IPR036322 GO:0005515
Pumo4g03228 380 FunFam polycomb group protein FIE1 27 376 - -
Pumo4g03228 380 Gene3D - 29 376 IPR015943 GO:0005515
Pumo4g03228 380 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 213 - -
Pumo4g03228 380 SMART WD40_4 237 274 IPR001680 GO:0005515
Pumo4g03228 380 SMART WD40_4 286 327 IPR001680 GO:0005515
Pumo4g03228 380 SMART WD40_4 332 373 IPR001680 GO:0005515
Pumo4g03228 380 SMART WD40_4 125 165 IPR001680 GO:0005515
Pumo4g03228 380 SMART WD40_4 168 211 IPR001680 GO:0005515
Pumo4g03228 380 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 174 IPR001680 GO:0005515
Pumo4g03228 380 PANTHER POLYCOMB PROTEIN 7 376 - -
Pumo4g03228 380 ProSitePatterns Trp-Asp (WD) repeats signature. 152 166 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03228 Pumo-Chr4 66577948 66582264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03228 108 375 Miscellaneous Gene Families AT5G08390 22.628 2.07e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03228 K11462 - gmx:100785120 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03228 4 66577948 66582264 Pumo4g03228 4 66577948 66582264 ECH