Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g03226 ATGCAAGTGCGTTACTCCTACTACGTTCGAAATCTAAGCACTGGACTCCGTTCACGTTCAGCCAAACGCGCCACTACCAAATCTCAATCTTCTTCTTCTACTTTAGCCTCGTTATTCCTTGATGAGGATTTCACGCTCTCAAGCCTCAAGCTTAAGCGACCCTCTGCTTCAGGTGATTCGTCTAATGGGGTGTTTAAGCAGATTTCTTCTATTTTCCGCACTGGTAAGTCAGTCAAGAAACCCGATTCTGAGGAAATTGATGGGGCAAAGGAGTTTGAAACAATGCCAAATCTATCATGGTTGTCAAGCGTACCTCAAAGCAATATATTACTGCAACGGAAAGAGCAATCTCGTAAAAAGAAACAAAAATGTGTCTTTGAATTCACTCAAGAAAGCCGTTTTCAGAAGTTAATTGAAGTCTGTGCAAGAATGCTAGGACCAGAGGCTACCCTTGAGTTATTTGGTAAAGTTGGACAAGAACCAGGTGTGAAAGGATACAATGCATTGGTAGAAATGTGCATAGATAAGGCCAGGGGAACTGATGATGAAGACATTGCGATAGAAGAACTGGGGAAGGTTTTTAACCTTTTTAAATCAATGAGGGAACAAGGTTTAGAGCTACAAGAGCAAACATATCGCCCGCTTCTTTTGTATATGATTGACATGTGTATGGTTGAGGAGTTTCAATTTTTCTGTCTTGTTATCAAAGATGAGAATCCCAGTTCAGTTACAAGACTGGGTTACTATGAAATGTTGCTGTGGTTAAAAGTTAATGACGAAGAAAAGATTCAGGGTATTTGTAACTATATTGCAGAGAATGATGGTAAAGACACATCTGATATACGAGAAAGTTATTTATTAGCTCTTTGTGAAAGTGAACGGACAGACGAGATTTTGAAGCTGTTGGAAATCATAGACATAAAAACCCTTTCATCTGCTGAATCTGTAGCAAAGATATTTCAGGCATTAGGAAGATTACTATTGGAACCTGTAGCAGAGAAGTTCCTTTTAGACTTCAAAACAAGTGATCATGAAGCAGATAATATTACAAACTTCATTGCTAGTTATGCTGTTAGCATTCCAGATTTATCGGTTGAGGATGTCATAAAAAAATTCAAAGATTTGCACCAAAATCTAGAAGTTTCACCTTCATCCTCATCATATGAGAAGCTCATTTTACATAGCTGTGCATTGCTCAAGGTACATGTAGCACTTGATATTGTCAATGAAATGTGTGAAGCAGGCTTGACTCTATCAACCAAGGTGTTATGCTCAATATTACAAATCTGTGATGATACATCTGAATATAATTTGGTGCATCGAATCTTCTCAACCATACGTCGCTACAATTTGGAATCAAATGATGAAACATTCAGATCTATAATAGACTTGTTCTTGAAGATGAAAGATATTGAAGGTGCATATAAGATGCTTGATGATTTGGAGGAATTAAATTTGAAGCCGACAGCAGGGATGTACAATGCCATAATGGCAGAATGTTTTCGAGAGAAAAACATTAGTGATGGGGTGAGGGTTCTTGAGCACATGCAATGTGCTGATATAAAGCCTGATTCACAGACTTTCAGCTATCTGATTAGCAACTCCGAAACTGAAGAGGATATAGTGAAGTATTATGAAGAACTGAAGCAATCTGGAATAGTAGCTACAAAGCAAGTTTTCACGGCGCTTATAAATGCTTATGCTGCTTGCGGACAGTTGGACAAAGCAAAAAAGGTAATCTTAGATCCATTGATACCACCGAAGAGCTTGAACCAAATCAAGGGTGTTCTTGTCTCAGCACTTGCATCACATGGGCAATTGTCTGAGGCTTTTGTTATTTATGAGGAAATCAAGCAAGCTGGACACAAGCTGGAGGCAAAAGAAGTTATGAATCTCATTGAGCACACTCATTCCGAGGGAGAGTTGGATAGGTTGCTTCTGCTACTTGAGGAATTGGATGATGCAGACTATTGGAATGATGCTTGCTGCAGAATGATCTTGTATTGTATTCGGAATAAGCATTTAAGTTCTGCTGTTGAATTGTGTAATCTGCTCAAGGATAAGTTCCAAAGTGATGAGCAAGTTATGGAATTTCTCTTTGATAAGGTATTTTCTCTGATTGAAGAAGAGTCAGAGTCCAGTCATTTGCACACTTGCCTCGAGTTGCTTTCGGAAATCAAGGATAAGCTTGGCCTTTTGCCTTCACAGAAATGTCATGATTCTCTGCTACGTGCTTGTGCTAATGCCACTGATTTACATGATACTGAATGA 2271 0.3888 MQVRYSYYVRNLSTGLRSRSAKRATTKSQSSSSTLASLFLDEDFTLSSLKLKRPSASGDSSNGVFKQISSIFRTGKSVKKPDSEEIDGAKEFETMPNLSWLSSVPQSNILLQRKEQSRKKKQKCVFEFTQESRFQKLIEVCARMLGPEATLELFGKVGQEPGVKGYNALVEMCIDKARGTDDEDIAIEELGKVFNLFKSMREQGLELQEQTYRPLLLYMIDMCMVEEFQFFCLVIKDENPSSVTRLGYYEMLLWLKVNDEEKIQGICNYIAENDGKDTSDIRESYLLALCESERTDEILKLLEIIDIKTLSSAESVAKIFQALGRLLLEPVAEKFLLDFKTSDHEADNITNFIASYAVSIPDLSVEDVIKKFKDLHQNLEVSPSSSSYEKLILHSCALLKVHVALDIVNEMCEAGLTLSTKVLCSILQICDDTSEYNLVHRIFSTIRRYNLESNDETFRSIIDLFLKMKDIEGAYKMLDDLEELNLKPTAGMYNAIMAECFREKNISDGVRVLEHMQCADIKPDSQTFSYLISNSETEEDIVKYYEELKQSGIVATKQVFTALINAYAACGQLDKAKKVILDPLIPPKSLNQIKGVLVSALASHGQLSEAFVIYEEIKQAGHKLEAKEVMNLIEHTHSEGELDRLLLLLEELDDADYWNDACCRMILYCIRNKHLSSAVELCNLLKDKFQSDEQVMEFLFDKVFSLIEEESESSHLHTCLELLSEIKDKLGLLPSQKCHDSLLRACANATDLHDTE 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g03226 756 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Pumo4g03226 756 PANTHER OS02G0132600 PROTEIN 17 754 - -
Pumo4g03226 756 NCBIfam pentatricopeptide repeat 492 525 IPR002885 -
Pumo4g03226 756 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Pumo4g03226 756 Pfam PPR repeat 596 621 IPR002885 -
Pumo4g03226 756 Pfam PPR repeat 559 580 IPR002885 -
Pumo4g03226 756 Gene3D Tetratricopeptide repeat domain 129 328 IPR011990 GO:0005515
Pumo4g03226 756 Gene3D Tetratricopeptide repeat domain 362 537 IPR011990 GO:0005515
Pumo4g03226 756 Gene3D Tetratricopeptide repeat domain 538 666 IPR011990 GO:0005515
Pumo4g03226 756 Pfam Pentacotripeptide-repeat region of PRORP 393 549 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g03226 Pumo-Chr4 66563661 66572730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g03226 332 701 Glycosyltransferase AT1G05670 20.157 1.91e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g03226 - - gmx:100306302 1258.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g03226 4 66563661 66572730 Pumo4g03226 4 66563661 66572730 ECH