Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02239 ATGAGTGCGTCTAGGTTCATCAAGTGTGTTACTGTTGGGGATGGAGCTGTGGGTAAAACTTGTTTGCTAATTTCCTACACCAGCAACACCTTTCCCACTGATTATGTGCCAACTGTTTTTGACAATTTTAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAACCTAGGATTGTGGGACACTGCTGGTATTGTTGCTACTTTTTTCTTTGTCAAATTTGGAATGTTGAGTTCTTTTCGGATTTTTATTGTTCTATTTTGTGGAATAGGGCAAGAGGATTATAATAGATTACGACCTTTGAGTTACCGTGGTGCGGATGTTTTCATATTGGCTTTCTCTCTCATAAGCAAGGCTAGCTATGAAAATGTTTCCAAGAAGTGGATTCCAGAGTTGAAGCATTATGCACCTGGTGTTCCCATTATTTTGGTTGGCACAAAGATTGATCTTCGAGATGATAAACAATTCTTCATAGACCATCCTGGTGCCGTACCCATTACCACTGCTCAGGGAGAAGAACTTAGGAAGCTGATTAATGCACCTGCTTACATTGAATGCAGTTCGAAATCACAAGAGAACGTAAAGGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAAAAGAAAAAGAAGAATAAAGCACAAAAGGCTTGTTCAATATTGTGA 675 0.4015 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGIVATFFFVKFGMLSSFRIFIVLFCGIGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKIDLRDDKQFFIDHPGAVPITTAQGEELRKLINAPAYIECSSKSQENVKAVFDAAIRVVLQPPKQKKKKNKAQKACSIL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02239 224 ProSiteProfiles small GTPase Rho family profile. 1 204 - -
Pumo4g02239 224 SMART rab_sub_5 7 207 - -
Pumo4g02239 224 PRINTS Transforming protein P21 ras signature 182 204 - -
Pumo4g02239 224 PRINTS Transforming protein P21 ras signature 30 46 - -
Pumo4g02239 224 PRINTS Transforming protein P21 ras signature 7 28 - -
Pumo4g02239 224 PRINTS Transforming protein P21 ras signature 136 149 - -
Pumo4g02239 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 205 IPR027417 -
Pumo4g02239 224 ProSiteProfiles small GTPase Ras family profile. 2 224 IPR001806 GO:0003924|GO:0005525
Pumo4g02239 224 FunFam Rho-related GTP-binding protein RhoG 68 210 - -
Pumo4g02239 224 SMART rho_sub_3 9 207 IPR001806 GO:0003924|GO:0005525
Pumo4g02239 224 NCBIfam small GTP-binding protein domain 7 66 IPR005225 GO:0005525
Pumo4g02239 224 NCBIfam small GTP-binding protein domain 90 198 IPR005225 GO:0005525
Pumo4g02239 224 PANTHER RHO FAMILY GTPASE 4 222 IPR003578 GO:0005525|GO:0007264
Pumo4g02239 224 Pfam Ras family 85 205 IPR001806 GO:0003924|GO:0005525
Pumo4g02239 224 Pfam Ras family 8 63 IPR001806 GO:0003924|GO:0005525
Pumo4g02239 224 ProSiteProfiles small GTPase Rab1 family profile. 2 224 - -
Pumo4g02239 224 CDD Rop_like 6 205 - -
Pumo4g02239 224 Gene3D - 5 219 IPR027417 -
Pumo4g02239 224 SMART ras_sub_4 4 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02239 Pumo-Chr4 33060746 33063166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02239 7 207 EF-hand Containing Proteins AT5G27540 23.383 2.62e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02239 K04392 - cpap:110822138 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02239 4 33060746 33063166 Pumo4g02239 4 33060746 33063166 ECH