Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02228 ATGAGGTGCGAGAGCCGATGTCAAGCCCGCACAGTTCTAGTTAGTGCTAAATACATAAAGTATAATACTGGGGCTGGTGTTGTGCCTGGCAAATTGAATGTTCACCTGGTTGCACACTCCCATGATGATGTTGGTTGGCTCAAGACCATTGATCAGTACTATGTTGGGTCAAACAATAGTATTCAGGGGGCATGTGTTGAGAATGTGCTGGACTCGGTGGTTGTGTCTCTTCAGAAAGATCCAAATAGAAAGTTTGTGTTTGCTGAAATGGCATTTTTCCATCGATGGTGGGTAGAACAAAGTCCAGAAACACAAGAAATAGTGAGAAAGCTTGTGGATGCTGGGCAGCTAGAATTCATAAATGGTGGTTGGTGCATGCATGATGAAGCCACGACACACTACATAGACATGATTGATCAAACCACTTTGGGTCATCGCTTCATCAAGGATCAGTTTAACAAGACCCCTACTGTTGGATGGCAGATTGATCCATTTGGACACTCTGCTGTGCAGGCTTACCTACTAGGGGCTGAGCTTGGGTTTGATTCTGTACATTTTGGTAGGATTGATTATCAGGACAGAGATAAACGCATAGCTGACAAGTCTCTTGAAGTTGTTTGGCGTGGGTCCAAAACATTAGGTTCTTCAGCTCAGATTTTTGCCAATGCTTTCCCCGTTCGTTATACTGCTCCAGATGGTTTTAACTTTGAAGTCAAAAATTACTTTGTTCCAATACAGGATGATCCTTGTCTTTCTGATTATAACGTTGAACAACGTGTGCAAGACTTTATTGACGGTGCTATGGCCCAAGCAAAGGTGACGAGGACAAACCATATAATGTGGACATTGGGTGATGATTTCGCGTACCAATATGCAGAGTCTTGGTTCAAGCAAATGGATAAATTAATTCACCATGTTAATAAGGATGGTAGAGTAAATGCTTTGTATGCTGATCAAGAACATGCTTACTGGACTGGCTATTTCACGAGTCGCTCAGCCTTAAAAGGATATGTTAGGATGCTAAGTGGATATTATTTGGCAGCACGTCAACTTGAATTCTTAATTGGAAAGAAATCAACTAAATACAATACTTTTGACCTTGGAGATGCTCTAGGAATTGCACAACACCATGATGCTGTCACTGGCACTGCCAAGCAACATACAACCAATGACTACGCTAAACGACTAGCTATCGGAGCCTCTAAGGCTGAAGCGATTGTTAGTTCTTCTTTGGCTTGTCTTACTAGTAAGCAATCAAGTGATCAATGTTCAGCACTTGCATCGTCGTTTGCCCAGTGTCAATTGTTCAACATCAGTTATTGTCCTCCTACAGAAGACAATATCCCAGATGACAAGAGTTTGGTAGTAGTGGTGTATAATCCACTTGGATGGAGTCGTACTGATATTGTCAAAATACCAGTTAATGATGATAATCTTGTTGTTCAAGATTCAACGGGTAATAACCTTGAAGTGCAATATGTGGATGTGGATGATGTTACAAAAACAATAAGAAATTTCTACGTGGAGGCTTATTTGGGGTTGTCACCAAAACAAGTCCCAAATTACTGGCTTCTGTTTCAAGTGTCAGTACCTCCACTTGGATGGAGTACGTACTTCATTTCAAAAGCAGCTGGAAAAGGGACTAGGAGAAGGGATATGTCTCAACTCAGCAATCAGAAAGGTGAGACCATTAACATAGGATCGGGAAATTTAAAGATTTCATTTTCTTCAACCACTGGGCAACTCAAACGAATGTATAATTCCAAAACTGGAGTTGATATTCCAATTCAACAAAACTACCTCTGGTATGAATCTTATACGGGTTACCAGGCTTCTGGTGCATATATATTTCGACCTAGTGGATCTCCCCAAAAAGTTTCAAGATCTGGGCCCACCAAGGTAATCCGTGGACCACTAGTTGATGAAGTTCATCAGGAATTTAGCTCTTGGATTTACCAGGTTACTAGGCTTTACAAAGACAAAGATCATGCTGAAATTGAATTCACTATTGGTCCGATTCCTTCTAATGGTTGGGATGGAAAAGAGGTGATCACACAAATGACAACAAATATGGGCACAAACAAGGAGTTTTACACCGATTCTAATGGAAGAGATTTTCTAAAACGAGTTCGAGATTATAGGGAAGATTGGCCCCTTCAAGTTAATGAACGAGTTGCAGGAAACTATTACCCACTTAATCTTGGAATTTATACTAAGGACAACAAATCTGAGTTCTCGGTCTTAGTTGATCGTGCTGTTGGTGGGGCCAGCATCAATGATGGTGAGGTGGAATTGATGCTTCATAGGCGTATTCACCAAGATGATGGTCGAGGAGTAGGGGAGGCACTTGATGAACAAGTTTGCGTAAATAACTCATGTGAAGGACTAATAGTTAAAGGAAATTATTATATGAGCATCCACAAGCCTGGAGCTGGTTCACGATGGCGTCGTACAACTGGTCAGGAAATTTACTCACCATTCTTATTGGCTTTTACGCATGAGAACTTGGAAAATTGGAAGTCCTCTCATTTAATCGAAGGAACTATTATGGATCCAAATTACAACTTACCTCCCAATGTTGCTCTAATAACTCTTGAGGAGTTGGATGGTGGAATTGTGCTTCTTCGTTTGGCACATCTATATGAGGCAAGTGAAGATGTTGAGTATTCAACTTTGGCCAAAGTTGAACTAAAGAAGTTGTTTGCCAAAGAAATGATAAAGGAGTTGAAGGAAGTAAGTTTATCAGCTAACCAAGTGAAGTCAAAAATGAAGAAGATGACATGGAATGTTGAAGGGGGCAAATCGCAAGAACCTCAAGCAGTTAGGGGTGGCCCTGTCAACAATGATGATTTTGTGGTTGAGCTCGGTCCCATGGAAATACGAACTTTCCTGTTGAAATTTTAA 2904 0.4094 MRCESRCQARTVLVSAKYIKYNTGAGVVPGKLNVHLVAHSHDDVGWLKTIDQYYVGSNNSIQGACVENVLDSVVVSLQKDPNRKFVFAEMAFFHRWWVEQSPETQEIVRKLVDAGQLEFINGGWCMHDEATTHYIDMIDQTTLGHRFIKDQFNKTPTVGWQIDPFGHSAVQAYLLGAELGFDSVHFGRIDYQDRDKRIADKSLEVVWRGSKTLGSSAQIFANAFPVRYTAPDGFNFEVKNYFVPIQDDPCLSDYNVEQRVQDFIDGAMAQAKVTRTNHIMWTLGDDFAYQYAESWFKQMDKLIHHVNKDGRVNALYADQEHAYWTGYFTSRSALKGYVRMLSGYYLAARQLEFLIGKKSTKYNTFDLGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASKAEAIVSSSLACLTSKQSSDQCSALASSFAQCQLFNISYCPPTEDNIPDDKSLVVVVYNPLGWSRTDIVKIPVNDDNLVVQDSTGNNLEVQYVDVDDVTKTIRNFYVEAYLGLSPKQVPNYWLLFQVSVPPLGWSTYFISKAAGKGTRRRDMSQLSNQKGETINIGSGNLKISFSSTTGQLKRMYNSKTGVDIPIQQNYLWYESYTGYQASGAYIFRPSGSPQKVSRSGPTKVIRGPLVDEVHQEFSSWIYQVTRLYKDKDHAEIEFTIGPIPSNGWDGKEVITQMTTNMGTNKEFYTDSNGRDFLKRVRDYREDWPLQVNERVAGNYYPLNLGIYTKDNKSEFSVLVDRAVGGASINDGEVELMLHRRIHQDDGRGVGEALDEQVCVNNSCEGLIVKGNYYMSIHKPGAGSRWRRTTGQEIYSPFLLAFTHENLENWKSSHLIEGTIMDPNYNLPPNVALITLEELDGGIVLLRLAHLYEASEDVEYSTLAKVELKKLFAKEMIKELKEVSLSANQVKSKMKKMTWNVEGGKSQEPQAVRGGPVNNDDFVVELGPMEIRTFLLKF 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02228 967 FunFam Alpha-mannosidase 846 967 - -
Pumo4g02228 967 SUPERFAMILY Families 57/38 glycoside transferase middle domain 321 420 IPR028995 -
Pumo4g02228 967 FunFam Alpha-mannosidase 32 312 - -
Pumo4g02228 967 Gene3D - 849 967 - -
Pumo4g02228 967 SUPERFAMILY Galactose mutarotase-like 427 967 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pumo4g02228 967 Pfam Glycosyl hydrolases family 38 N-terminal domain 33 318 IPR000602 GO:0004559|GO:0006013
Pumo4g02228 967 PANTHER ALPHA-MANNOSIDASE 316 967 - -
Pumo4g02228 967 Gene3D Glycoside hydrolase family 38, central domain 321 425 IPR037094 GO:0004559|GO:0006013
Pumo4g02228 967 FunFam Alpha-mannosidase 364 420 - -
Pumo4g02228 967 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 859 964 IPR041147 -
Pumo4g02228 967 Pfam Glycosyl hydrolases family 38 C-terminal domain 567 777 IPR011682 GO:0004559|GO:0006013
Pumo4g02228 967 Gene3D - 432 544 IPR013780 -
Pumo4g02228 967 Coils Coil 892 912 - -
Pumo4g02228 967 CDD GH38N_AMII_LAM_like 32 308 - -
Pumo4g02228 967 SMART Alpha_mann_mid_2 322 396 IPR015341 GO:0004559|GO:0006013
Pumo4g02228 967 SUPERFAMILY Glycoside hydrolase/deacetylase 21 319 IPR011330 GO:0005975
Pumo4g02228 967 FunFam Alpha-mannosidase 432 543 - -
Pumo4g02228 967 Gene3D - 563 825 - -
Pumo4g02228 967 Pfam Alpha mannosidase middle domain 322 414 IPR015341 GO:0004559|GO:0006013
Pumo4g02228 967 Gene3D Glycoside hydrolase 38, N terminal domain 32 314 IPR027291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02228 Pumo-Chr4 32903006 32932176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02228 14 914 Glycoside Hydrolase AT3G26720 56.745 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02228 K01191 - gmx:100775419 1653.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02228 4 32903006 32932176 Pumo4g02228 4 32903006 32932176 ECH