Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02227 ATGGTGCTCGAGGCGACGATGATCTGTATTGACAATTCGGAATGGATGCGTAACGGGGATTACGCTCCTTCTCGATTTCAAGCCCAAGCTGACGCCGTCAATCTTATTTGCGGTGCTAAAACCCAGTCTAATCCAGAAAATACGGTGGGAGTTCTCACGATGGCAGGGAAGGGCGTTCGGGTTTTGGTGACCCCTACAAGTGATTTGGGCAAGATCTTAGCTTGCATGCATGGACTAGAAATAGGTGGTGAGATGAACCTAGCTGCTGGCATTCAGGTGGCACAATTGGCACTTAAGCATCGGCAGAATAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAAGTCCTGTTAAGCACGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAAAAAGAATAGTGTAGGTCTTGACATTGTCAATTTTGGTGAAGAAGATGAGGGGAAGACAGAGAAGTTGGAGGCACTCCTTTCAGCTGTTAACAATAATGATACCAGTCATATCGTTCATGTTCCATCTGGTCCAAATGCTCTTTCTGATGTACTAATAAGTACTCCTATTTTTACTGGTGACGGGGAAGGTGGAAGTGGTTTTGCAGCAGCAGCTGCTGCTGCAGCAGCAGGTGGTGTATCTGGATTTGAGTTTGGTGTTGATCCAAACTTGGACCCTGAACTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCCAGACAGGAAGCAGCTGCCAAAAAGGCAGCAGAGGATGCTTCCAAACAGGAGAAAGGTGGTGAGCAGCAAGCTAGCCCACAGGATACAACAATGACTGAGGGTGCCAGTGCAGCAGCTTCTGAAGCTGAGACTAAGAGAACTGATTTGACGGACGACGAGAATGCTCTACTGCAGCAGGCCCTTGCAATGTCAATGGACGATCCCGCAGTTAACCATGATGTGAGAGATACAGATATGTCTGAAGCAGCTGCTGATGATCCTGAGTTGGCTCTAGCTCTTCAATTGTCAGTAGAAGACAGCACAAAGGATTCGACAAGCCAGTCTGACGTGAGCAAACTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTACTGGCTTCCATGCAAAATCAGTCTGAGGTAGGTTTTCTTTTATGGAAAATAATCGGTGGGTTTGAAAAGAATCTTTTAGAAGATTTCACTGGGGGAATGTTTGAATTTAGCTTCACCTAG 1260 0.4603 MVLEATMICIDNSEWMRNGDYAPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVKHEKKMLEMIGRKLKKNSVGLDIVNFGEEDEGKTEKLEALLSAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGEQQASPQDTTMTEGASAAASEAETKRTDLTDDENALLQQALAMSMDDPAVNHDVRDTDMSEAAADDPELALALQLSVEDSTKDSTSQSDVSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEVGFLLWKIIGGFEKNLLEDFTGGMFEFSFT 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02227 419 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Pumo4g02227 419 CDD PSMD4_RAZUL 346 389 - -
Pumo4g02227 419 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Pumo4g02227 419 FunFam 26S proteasome non-ATPase regulatory subunit 4 3 186 - -
Pumo4g02227 419 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Pumo4g02227 419 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Pumo4g02227 419 Pfam Ubiquitin interaction motif 325 340 IPR003903 -
Pumo4g02227 419 SUPERFAMILY vWA-like 4 175 IPR036465 -
Pumo4g02227 419 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 380 IPR027040 GO:0006511|GO:0008540
Pumo4g02227 419 FunFam 26S proteasome non-ATPase regulatory subunit 4 homolog 220 306 - -
Pumo4g02227 419 Gene3D - 220 306 - -
Pumo4g02227 419 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Pumo4g02227 419 SMART VWA_4 2 175 IPR002035 -
Pumo4g02227 419 MobiDBLite consensus disorder prediction 259 277 - -
Pumo4g02227 419 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Pumo4g02227 419 Coils Coil 232 252 - -
Pumo4g02227 419 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 324 343 IPR003903 -
Pumo4g02227 419 MobiDBLite consensus disorder prediction 241 258 - -
Pumo4g02227 419 MobiDBLite consensus disorder prediction 241 290 - -
Pumo4g02227 419 CDD VWA_26S_proteasome_subunit 1 188 - -
Pumo4g02227 419 SMART uim 292 311 IPR003903 -
Pumo4g02227 419 SMART uim 324 343 IPR003903 -
Pumo4g02227 419 SMART uim 222 241 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02227 Pumo-Chr4 32896562 32901678 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02227 K03029 - gmx:100780583 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02227 4 32896562 32901678 Pumo4g02227 4 32896562 32901678 ECH