Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02172 ATGGCCGCACACACACTAAGCAAAGCCTTAATGTTCCTTCTCATCTTCTCATCTCTTACCTCAATTTCGGAGCCATGTCACGTGGTGGACAAAGAAGCATTACTAGAATTCAAGAGCAGGATCACCTCTGACCCTTCAAAACTGCTACATTCTTGGACACCTTCCTCTGACTGTTGCCACAACTGGGAAGGCATCGCATGTGGTTCCAATGGCAGGGTCATCAACCTCACTAGAATTGGTGTAGTGTACGACGTTGATCTCCCTCTAGAAACATACATGTCAGGAACACTATCGCCTTATCTTGGAAACTTGTCTAGTTTGCAAGTTTTGGACCTTAGCAATCTGAAGCAGTTGCATGGTCCAATACCTCCAGAACTGGCCAAGTTATCCCACTTGAGAAAACTATTTCTCTACTCAAACAAGTTCTCAGGTGGCATACCAGCAACATTTCAAAAGCTTTCTCATCTTGAGAGTTTGTACCTTGACAACAACCACTTATCTGGTAATGTTCCTTCTTCTGTCTTTGCCTCATTGAAGTCTCTCTCAGAACTTGGCCTATCTGGGAACAAGCTTTCTGGGAGGATTCCTTCTTCCATTGGAAGCATGGTGTTTCTCACCAGGCTCGATCTTCGCGAAAACAATTTCCATGGCAACATTCCTTCTAGCATTGGCAATCTTGTAAGTCTCAAGGGCTTGGATTTCTCTTATAATCAGATTAGTGGAAGAATCCCAGAGTCAATTGGGAGACTTTCACAGTTGGTTTTTCTAGATCTGATGCATAACAGTGTCACAGGAAACATCCCTTTTTCTATTGGGGATTTAAGTTCTCTAACATTCTGCAGGTTATCAGAGAACATGCTAACTGGCATTTTGCCTTATTCCATTGGAAAACTCAAGAATATGCAAAGGCTAATTCTTGAGAACAACAAACTCAGTGGGAAGTTACCTGCCACCATTGGCCATCTAACTAGCTTAACTGATTTATTTCTTGCAAAGAATGAATTTAGTGGCAAAATTCCACCTTCCTTTGGCAATTTAATTAACCTGCAAACACTGGATTTGTCAAGGAACCAACTTTCGGGTGGGCTTCCCTCTCAACTTGCTAAACTACAGAGTTTGCAAACCTTAGACTTGTCATTCAACCCACTAGGACTAGCCAAAGTACCCAATTGGGTTTCCAAATTGAGAGTTTTTCAGTTGAAATTGGCCAATACGGGGATTAAAGGTCAACTTCCAAAGTGGCTTTCATATTCATCAGTGGCAACCCTTGATTTGTCAAGCAATGCATTAACGGGGAAACTGCCATGGTGGATTGGGAACATGACACGCCTTTCCTTCCTGAACCTTTCAAACAACGAATTCCATTCATCAATCCCAGTGGCACTCAAGAACCTTTCTTCTCTGATGGACCTTGATCTCCACTCCAATAAGCTCACTGGCTCTCTCAGAGTGGTGTTTGAGAAAGAGGTTCAATTCTCACTTGGCCATTTCAACTCCATTGACCTATCTAACAACAAGTTTTGTGGTCCCATCGATGAGAACATTGGAGAAAAGGCCTCAATGAGTTCAATCAAATTTCTTGCATTGTCACACAACCCATTGGGAGGATCTATACCAAAGTCAATTGGGAAACTGAGAGAATTGGAGACTCTGGACCTTGAGGACAGTGAGGTCTCGGGGAATATACCTGAAGAGCTTGGTGATGTTGAAACGTTAACGAAGATTAATCTTTCAAAGAACAAATTAAGTGGCAACATACCGGAGAGGGTAATAAATTTGAAGAGGCTTGAAGAGTTCGATGTGTCAAGGAACCGACTCAGAGGGAGGATCCCTCCACATAAGGCCATGTTCCCTATATCAGCTTTTGTAGGTAATCGTGGATTGTGTGGGCCACCACTTCCTCCTTGTAAACTTTATTAG 1920 0.4271 MAAHTLSKALMFLLIFSSLTSISEPCHVVDKEALLEFKSRITSDPSKLLHSWTPSSDCCHNWEGIACGSNGRVINLTRIGVVYDVDLPLETYMSGTLSPYLGNLSSLQVLDLSNLKQLHGPIPPELAKLSHLRKLFLYSNKFSGGIPATFQKLSHLESLYLDNNHLSGNVPSSVFASLKSLSELGLSGNKLSGRIPSSIGSMVFLTRLDLRENNFHGNIPSSIGNLVSLKGLDFSYNQISGRIPESIGRLSQLVFLDLMHNSVTGNIPFSIGDLSSLTFCRLSENMLTGILPYSIGKLKNMQRLILENNKLSGKLPATIGHLTSLTDLFLAKNEFSGKIPPSFGNLINLQTLDLSRNQLSGGLPSQLAKLQSLQTLDLSFNPLGLAKVPNWVSKLRVFQLKLANTGIKGQLPKWLSYSSVATLDLSSNALTGKLPWWIGNMTRLSFLNLSNNEFHSSIPVALKNLSSLMDLDLHSNKLTGSLRVVFEKEVQFSLGHFNSIDLSNNKFCGPIDENIGEKASMSSIKFLALSHNPLGGSIPKSIGKLRELETLDLEDSEVSGNIPEELGDVETLTKINLSKNKLSGNIPERVINLKRLEEFDVSRNRLRGRIPPHKAMFPISAFVGNRGLCGPPLPPCKLY 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02172 639 PANTHER DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 7 511 - -
Pumo4g02172 639 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 364 639 - -
Pumo4g02172 639 SUPERFAMILY RNI-like 95 505 - -
Pumo4g02172 639 FunFam Piriformospora indica-insensitive protein 2 174 262 - -
Pumo4g02172 639 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 269 363 - -
Pumo4g02172 639 Gene3D Ribonuclease Inhibitor 291 387 IPR032675 -
Pumo4g02172 639 PRINTS Leucine-rich repeat signature 370 383 - -
Pumo4g02172 639 PRINTS Leucine-rich repeat signature 349 362 - -
Pumo4g02172 639 Gene3D Ribonuclease Inhibitor 195 290 IPR032675 -
Pumo4g02172 639 Gene3D Ribonuclease Inhibitor 28 194 IPR032675 -
Pumo4g02172 639 FunFam Nuclear pore complex protein NUP107 28 173 - -
Pumo4g02172 639 Pfam Leucine rich repeat 205 262 IPR001611 GO:0005515
Pumo4g02172 639 Pfam Leucine rich repeat 130 191 IPR001611 GO:0005515
Pumo4g02172 639 Pfam Leucine rich repeat 324 383 IPR001611 GO:0005515
Pumo4g02172 639 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Pumo4g02172 639 Gene3D Ribonuclease Inhibitor 388 638 IPR032675 -
Pumo4g02172 639 SMART LRR_typ_2 521 545 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 346 369 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 441 464 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 178 202 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 153 177 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 129 152 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 274 297 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 465 488 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 226 250 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 370 395 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 593 624 IPR003591 -
Pumo4g02172 639 SMART LRR_typ_2 298 322 IPR003591 -
Pumo4g02172 639 SUPERFAMILY L domain-like 399 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02172 Pumo-Chr4 31706509 31708428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02172 1 638 Receptor kinase-like Gene Family AT4G08850 34.971 3.63e-94 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02172 - - gmx:102664464 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02172 4 31706509 31708428 Pumo4g02172 4 31706509 31708428 ECH