Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02171 ATGGGGTCTCTTCCCTCCCTCACTTTCCCTCACTTTCACCTCTTTCTGCTTCTCGCAGCTTCAGCAACCTCATTCGTCGCAGAATCAGCAACACATTGGGGCGACACGCAGGTCCTGAAGCAACTAAAGAACAACCTCGACCCAGCCTCTGTCTCTCCAGGCTCCTGCGTCAGCTCCTGGGACTTCTCCCTCGACCCCTGCGACAACCTCTTCAGCGACAAGTTCACGTGCGGCTTCAGGTGCGACGCCGTCGTTTCGGGAGCCACCCGAGTCACCGAACTCACCCTCGACCCGGCTGGTTACGCCGGCTCGCTCTCCGCCACGTGGAACAACCTCCCCTACCTCGAAACCCTCGACGTCTCCAACAACTACTTCTCAGGCCCAATCCCCGAGTCACTCTCCAACTTGACTCGGCTAACTCGACTCGCCCTATCCAAAAACTCCCTCACCGGCCCAATACCCTCTTCCCTCGCCTCCCTCACGAACCTCCAAGAGCTCTATCTCGACAATAACAACCTCAACGGAATCATCCCCGTTAGTTTTAACGCCCTTATAAACCTCAAACGCCTCGAACTCCAGTCCAACAAGCTAAACGGCGCCGTTCCAAATTTGAGCTCTCTGAAGAATCTCTACTACTTGGACCTCAGCTTTAACTCCCTCACCGGAGCGTTTCCGTCATCGTTACCCGAATCCTTAGTTCAAATCTCAATCCGCAACAACAGTTTAAACGGCGCGTTGGAATCTGAGAGCTTGAGAAAGTTAAAGTACTTGCAAGTGGTGGATTTGAGTTCAAACAACCTCAACGGTTCCGTTCCGTTTGTTCTCTTCGAGCTTCCCTCACTGCAACAAATAACACTATCTTTCAACGAGTTTTCCTATATCGAATCCCCTTCTTACGCTCTGAACACGCGAAGCGGGGTCATAGCGGTTGATCTGAGCGACAACGAGCTCGGAGGGTTTCTTCCGATGTTCCTGGCGCTGATGCCGAAGCTCTCGTCTTTGTCCTTAGAGAACAACACGTTCGTGGGTATGATCCCGACCCAGTACGCGTTGAAAACGGTGTTTCCGGAACCCGGGGTGGCTCCGTTCGAGAGGCTTCTGTTGGGGGGGAATTACTTGTTCGGAGGTGTTCCCAGTGCTCTAATGGCGCTTGAACCCGGTTCTGCGAACGTGAGGCTTGTGGATAATTGCTTGTATAGGTGTCCTATTAGTTTCTTCTTTTGTCAGGGTGGGGAACAGAAATCTTCTGAAGAATGCAAGAGATTTAGCCACTTCATCCCCTAG 1284 0.5257 MGSLPSLTFPHFHLFLLLAASATSFVAESATHWGDTQVLKQLKNNLDPASVSPGSCVSSWDFSLDPCDNLFSDKFTCGFRCDAVVSGATRVTELTLDPAGYAGSLSATWNNLPYLETLDVSNNYFSGPIPESLSNLTRLTRLALSKNSLTGPIPSSLASLTNLQELYLDNNNLNGIIPVSFNALINLKRLELQSNKLNGAVPNLSSLKNLYYLDLSFNSLTGAFPSSLPESLVQISIRNNSLNGALESESLRKLKYLQVVDLSSNNLNGSVPFVLFELPSLQQITLSFNEFSYIESPSYALNTRSGVIAVDLSDNELGGFLPMFLALMPKLSSLSLENNTFVGMIPTQYALKTVFPEPGVAPFERLLLGGNYLFGGVPSALMALEPGSANVRLVDNCLYRCPISFFFCQGGEQKSSEECKRFSHFIP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02171 427 FunFam Nuclear pore complex protein NUP107 33 203 - -
Pumo4g02171 427 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 13 420 - -
Pumo4g02171 427 Pfam Leucine rich repeat 231 290 IPR001611 GO:0005515
Pumo4g02171 427 Pfam Leucine rich repeat 113 173 IPR001611 GO:0005515
Pumo4g02171 427 SMART LRR_typ_2 207 235 IPR003591 -
Pumo4g02171 427 SMART LRR_typ_2 160 183 IPR003591 -
Pumo4g02171 427 SMART LRR_typ_2 278 301 IPR003591 -
Pumo4g02171 427 SMART LRR_typ_2 184 206 IPR003591 -
Pumo4g02171 427 SMART LRR_typ_2 112 136 IPR003591 -
Pumo4g02171 427 Gene3D Ribonuclease Inhibitor 203 301 IPR032675 -
Pumo4g02171 427 Gene3D Ribonuclease Inhibitor 302 392 IPR032675 -
Pumo4g02171 427 SUPERFAMILY L domain-like 51 385 - -
Pumo4g02171 427 Gene3D Ribonuclease Inhibitor 34 202 IPR032675 -
Pumo4g02171 427 PRINTS Leucine-rich repeat signature 254 267 - -
Pumo4g02171 427 PRINTS Leucine-rich repeat signature 210 223 - -
Pumo4g02171 427 ProSiteProfiles Leucine-rich repeat profile. 162 183 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02171 Pumo-Chr4 31700105 31701668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02171 115 384 Receptor kinase-like Gene Family AT4G36180 35.473 2.74e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02171 - - gmx:100787530 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02171 4 31700105 31701668 Pumo4g02171 4 31700105 31701668 ECH