Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02117 ATGAGTTTCAGGGAAGAGAGTGGAGATGCGAGGGATCTCCAGAAACCGTTCCTCCACACGGGGAGTTGGTACAAGATGGGTTCGAGACAGTCCAGCATCATGGGATCCTCCACTCAGGTCATCCGCGACGGGGCCGTCTCCGTCCTCTTTTGCGTCCTCATCGTCGCCCTGGGTCCCATCCAATTCGGCTTCACGTGTGGGTATTCTTCTCCAACGCAAGGGGCTATAGTCCGTGATCTAAAGCTCTCAGTTTCAGAGTTTTCTTTGTTTGGATCTTTGTCCAATGTGGGAGCGATGGTGGGAGCTATAGCTAGTGGTCAGATAGCTGAATACATAGGGCGCAAAGGGTCGTTGATGATTGCTGCGATTCCCAATATAATAGGATGGCTTGCTATTTCTTTTGCCAAAGATTCCTCGTTTTTGTTTATGGGGAGGTTGTTGGAAGGTTTTGGTGTTGGGATTATCTCTTATGTGGTGCCTGTTTATATAGCTGAGATTGCACCTCAAAACTTGAGAGGTGGCCTTGGATCAGTGAACCAGCTCTCTGTTACAATTGGCATTATGCTGGCTTATCTATTGGGCCTTTTTGTCAACTGGAGAGTGCTTGCAATTCTAGGAATTTTGCCTTGTACAGTATTAATACCTGGATTATTTTTCATACCAGAATCCCCCAGATGGTTGGCCAAGATGGGGATGATAGATGAGTTTGAGACTTCTTTGCGAGTGTTACGAGGATTTGACACAGATATTTCTGTTGAAGTACATGAAATTAAGAAATCCGTGGCTTCAACGGGAAGAAGAGTTGCAATCCGATTTGCAGATCTCCAGAGGAGAAGATATTGGTTCCCCTTAATGATAGGAATTGGATTACTTGCTCTTCAGAATTTGTCTGGTATCAATGGAGTTTTGTTCTATTCAACTACCATCTTTGCAAATGCAGGAATTTCATCCAGCGAAGCTGCTACAGTTGGACTTGGAGCCATTCAGGTCATAGCAACTGGAATTGCCACTTGGTTGGTAGACAAAAGTGGCCGGAGGTTGCTTCTAATAATATCCTCATCTGTTACGACAGTTAGCCTTCTCATTGTGTCTGTAGCATTCTATCTGGAGGGGGTTGTATCAGAGGATTCACATCTATACATCATTTTGGGAATACTTTCTGTTGTTGGACTTGTGGTTATGGTGATTGGGTTCTCTCTAGGACTTGGACCAATCCCTTGGCTTATAATGTCTGAGATACTCCCAGTGAATATAAAGGGCCTAGCTGGCAGTTTAGCGATATTGGGAAATTATCTGACTTCGTGGGTGATCACGTTGACTGCTAACTTGCTTTTGAATTGGAGCAGTGGAGGGACATTTTTAATCTACACAGTTGTAGCTGCCTTTACTATTGCTTTTACAGCGATATGGGTCCCAGAGACAAAGGGTAGAACATTGGAAGAAATTCAGTTATCCTTCAGATAG 1464 0.444 MSFREESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGFTCGYSSPTQGAIVRDLKLSVSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKGSLMIAAIPNIIGWLAISFAKDSSFLFMGRLLEGFGVGIISYVVPVYIAEIAPQNLRGGLGSVNQLSVTIGIMLAYLLGLFVNWRVLAILGILPCTVLIPGLFFIPESPRWLAKMGMIDEFETSLRVLRGFDTDISVEVHEIKKSVASTGRRVAIRFADLQRRRYWFPLMIGIGLLALQNLSGINGVLFYSTTIFANAGISSSEAATVGLGAIQVIATGIATWLVDKSGRRLLLIISSSVTTVSLLIVSVAFYLEGVVSEDSHLYIILGILSVVGLVVMVIGFSLGLGPIPWLIMSEILPVNIKGLAGSLAILGNYLTSWVITLTANLLLNWSSGGTFLIYTVVAAFTIAFTAIWVPETKGRTLEEIQLSFR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02117 487 CDD MFS_GLUT6_8_Class3_like 49 481 IPR044775 GO:0008643|GO:0051119
Pumo4g02117 487 Gene3D MFS general substrate transporter like domains 43 487 IPR036259 -
Pumo4g02117 487 FunFam sugar transporter ERD6-like 6 42 486 - -
Pumo4g02117 487 ProSiteProfiles Major facilitator superfamily (MFS) profile. 51 475 IPR020846 GO:0022857
Pumo4g02117 487 PANTHER - 42 483 - -
Pumo4g02117 487 Pfam Sugar (and other) transporter 52 484 IPR005828 GO:0016020|GO:0022857|GO:0055085
Pumo4g02117 487 PRINTS Sugar transporter signature 388 409 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo4g02117 487 PRINTS Sugar transporter signature 294 304 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo4g02117 487 PRINTS Sugar transporter signature 411 423 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo4g02117 487 PRINTS Sugar transporter signature 142 161 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo4g02117 487 PRINTS Sugar transporter signature 59 69 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo4g02117 487 NCBIfam sugar porter family MFS transporter 44 482 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo4g02117 487 SUPERFAMILY MFS general substrate transporter 50 483 IPR036259 -
Pumo4g02117 487 ProSitePatterns Sugar transport proteins signature 2. 147 172 IPR005829 GO:0016020|GO:0022857|GO:0055085
Pumo4g02117 487 ProSitePatterns Sugar transport proteins signature 1. 105 122 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02117 Pumo-Chr4 30194404 30208808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02117 1 487 Organic Solute Cotransporters AT1G75220 77.869 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02117 K03444 - gmx:100813399 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02117 4 30194404 30208808 Pumo4g02117 4 30194404 30208808 ECH