Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02104 ATGGCTTCAACTACTGCTTGCATTACAAAGCTATTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGAATAAATGCTGCATTGGGAAATATGACTGAAGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGAAGTGATTGGCTTGGGGACCAAGATGCCATCCAATATATGTGTAGGGAGGCACCAAAAGCAGTCATTGAGCTTGAGAATTATGGATTGCCATTTTCACGAACTGAAGATGGAAGAATATACCAGCGTGCATTTGGTGGTCAGAGCTTGAACTTCGGAAAAGGTGGTCAGGCATATCGTTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAAGCTATGAGGCATAATAGCCAGTTTTTTGTGGAATATTTTGCATTAGATCTATTATTGAACAGTGATGGTAGTTGCCAAGGAGTGATTGCCTTGAATATGGAGGATGGAACATTACATCGTTTCCAAGCTGCTTCAACAATTTTGGCCACAGGGGGCTATGGTAGAGCATACTTTTCTGCAACCTCAGCACATACATGCACTGGAGATGGCAATGCAATGGTTGCACGTGCTGGGATCCCACTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACCGGCATATATGGAGCTGGCTGCCTTATCACAGAAGGTTCTCGCGGTGAAGGTGGAATTCTTAGGAACAGTGAAGGTGAGAGGTTTATGGAACGATATGCTCCTACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCTAGATCAATGACTATGGAAATCCGGGATGGCCGTGGTGTAGGCCCCCTGAAAGATCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTTCTCAAGGAGAGACTACCTGGTATCTCTGAAACAGCTGCTATTTTTGCTGGTGTGGATGTTACTAAGGAACCCATTCCTGTTTTGCCAACAGTACATTATAACATGGGTGGTATTCCCACGAATCATCACGGGGAGGTGGTTACTATTAAAGGTGATGATCCAGATGCAGTAGTTCCTGGATTAATGGCTGCTGGGGAAACAGCCTGTGCTTCAGTCCATGGTGCCAATAGGCTCGGTGCAAACTCACTTCTTGATATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCATAGGCCAGGAGAGAAACAAAAGCCTTTAGAGAAAGATGCTGGTATGAAAACAATTGCCTGGCTGGACAAATTGAGAAATTCAAATGGGTCATTGCCAACTTCAAAAATTCGGTTGAATATGCAACGAATAATGCAAAGCAATGCTGCTGTGTTCCGTACCCAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAGCATGGGAGAGCTTTCATGATGTCAAGTTGAAGGATCGAAGTTTGATATGGAACTCTGACTTGATTGAGACCATTGAGTTGGAAAATCTTTTGATAAATGCCTGCATCACAATGCACTCTGCTGAAGCAAGAAAAGAGAGTAGAGGTGCTCATGCCCGTGAGGACTTCACGAAAAGAGATGATGAGAACTGGATGAAGCACACTTTGGGATATTGGGAGAATGAGAATGTCCGGTTAGATTACAGGCCGGTTCACATGAATACGTTGGATGATGAGGTGGAATCATTCCCTCCTAAAGCTCGTGTTTATTAA 1695 0.4389 MASTTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNSQFFVEYFALDLLLNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIRDGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLEKDAGMKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQSNAAVFRTQETLEEGCQLIDKAWESFHDVKLKDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENENVRLDYRPVHMNTLDDEVESFPPKARVY 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02104 564 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 219 322 IPR027477 -
Pumo4g02104 564 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 516 564 - -
Pumo4g02104 564 Gene3D - 4 388 IPR036188 -
Pumo4g02104 564 NCBIfam succinate dehydrogenase flavoprotein subunit 4 564 IPR011281 GO:0006099|GO:0016627|GO:0050660
Pumo4g02104 564 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 209 327 IPR027477 -
Pumo4g02104 564 Gene3D succinate dehydrogenase protein domain 515 564 - -
Pumo4g02104 564 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 15 24 IPR003952 GO:0016491
Pumo4g02104 564 Pfam Fumarate reductase flavoprotein C-term 433 564 IPR015939 GO:0016491
Pumo4g02104 564 SUPERFAMILY FAD/NAD(P)-binding domain 5 400 IPR036188 -
Pumo4g02104 564 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 403 519 - -
Pumo4g02104 564 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 219 322 - -
Pumo4g02104 564 Pfam FAD binding domain 4 377 IPR003953 -
Pumo4g02104 564 Gene3D - 404 514 - -
Pumo4g02104 564 PIRSF SDHA_APRA_LASPO 14 554 - -
Pumo4g02104 564 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 4 564 IPR030664 -
Pumo4g02104 564 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 423 564 IPR037099 GO:0016491
Pumo4g02104 564 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 323 388 - -
Pumo4g02104 564 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 4 564 IPR014006 GO:0016627|GO:0022900|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02104 Pumo-Chr4 30004142 30010490 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02104 K00234 - gmx:100802169 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02104 4 30004142 30010490 Pumo4g02104 4 30004142 30010490 ECH
Pumo8g01841 8 54632374 54639597 Pumo4g02104 4 30004142 30010490 PCT