Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02076 ATGGCAACCGATAAAATTCTCAAGCCATCAAAGTGGTTCTCAAACAAAACTCTCAAGCTTAGTCTCAATCGCCGAAAATCATCATCAAGATCCTCCAATTCATCATCGAGGAGTAATTCTCCACCAAGATCCCCCGTGTCAGTGTGTTCAAATTCAACCCCAAAGAATAATGGTGGAGAGATCAATGGCCTCATGGAGGCTTTTCGCCACTTTGATGGAGATGGAGATGGCAAAATCTCTGCCTATGAACTAAGGTCATATTTTGGGTCCATTGGGGAGCACATGTCTCATGAAGAGGCTGAAGGGGTCATCCATGACCTCGATTCCGATGGGGACAACCTTTTGGACTTGAAGGATTTCACCAAGTTCATGAAGAAAGATGGTGATGATGATGATGGGGACCTAAGAAAGGCCTTTGAGATGTTTGTGTGGGACAAAGAAGGGTGTGGTTGCATCACCCCTAAAGGGTTGCAAAGGATGTTGCACCGCCTTGGTGATGACAAGTCCTATGATGAGTGTGTGGCCATGATTCATGCCTTTGACATTGACAACAATGGGGTCCTTGATTTCGATGAGTTTTACCAAATGATGGCGTAA 597 0.4506 MATDKILKPSKWFSNKTLKLSLNRRKSSSRSSNSSSRSNSPPRSPVSVCSNSTPKNNGGEINGLMEAFRHFDGDGDGKISAYELRSYFGSIGEHMSHEEAEGVIHDLDSDGDNLLDLKDFTKFMKKDGDDDDGDLRKAFEMFVWDKEGCGCITPKGLQRMLHRLGDDKSYDECVAMIHAFDIDNNGVLDFDEFYQMMA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02076 198 ProSitePatterns EF-hand calcium-binding domain. 72 84 IPR018247 -
Pumo4g02076 198 MobiDBLite consensus disorder prediction 21 59 - -
Pumo4g02076 198 SUPERFAMILY EF-hand 54 197 IPR011992 -
Pumo4g02076 198 ProSiteProfiles EF-hand calcium-binding domain profile. 59 94 IPR002048 GO:0005509
Pumo4g02076 198 FunFam Calmodulin-2 A 55 198 - -
Pumo4g02076 198 PANTHER CALCIUM BINDING PROTEIN 115 197 - -
Pumo4g02076 198 Pfam EF-hand domain pair 64 125 IPR002048 GO:0005509
Pumo4g02076 198 ProSitePatterns EF-hand calcium-binding domain. 181 193 IPR018247 -
Pumo4g02076 198 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Pumo4g02076 198 CDD EFh 64 125 IPR002048 GO:0005509
Pumo4g02076 198 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Pumo4g02076 198 Pfam EF-hand domain pair 150 197 IPR002048 GO:0005509
Pumo4g02076 198 Gene3D - 52 129 - -
Pumo4g02076 198 Gene3D - 130 198 - -
Pumo4g02076 198 ProSiteProfiles EF-hand calcium-binding domain profile. 168 198 IPR002048 GO:0005509
Pumo4g02076 198 MobiDBLite consensus disorder prediction 21 60 - -
Pumo4g02076 198 CDD EFh 135 198 IPR002048 GO:0005509
Pumo4g02076 198 SMART efh_1 134 164 IPR002048 GO:0005509
Pumo4g02076 198 SMART efh_1 172 198 IPR002048 GO:0005509
Pumo4g02076 198 SMART efh_1 99 127 IPR002048 GO:0005509
Pumo4g02076 198 SMART efh_1 63 91 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02076 Pumo-Chr4 29538401 29539382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g02076 1 198 EF-hand Containing Proteins AT3G50770 53.081 1.50e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02076 K13448 - gmx:100306370 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02076 4 29538401 29539382 Pumo4g02076 4 29538401 29539382 ECH