Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g02010 ATGTCGCGAATATTGGAGTCGGAGAAGCCACAGGTTCTCAAGAAGGTGGAAACCGAGTCTGGATTGCGAAAGGGATTCAGACGAAGTCGTTTTGAGGCTTTTAGGGCGGTTTTTGGGGAGAAGCCGGGAGTGTTGGTGAGGGACAGAGGTTCGAACCCCAACAGTGGATTTCACGGTTCAACCAGGGTTAAAGCCGGTTTAATGACGTCACGTTCGGATAGGGATGACAAAGTGTACTCGGATCCTACTGATTTCTCCCCAACGCGATGGAGGACCACCATTGCCATTGCTGCTGCAATTGTCATTGTTTCTCCCAACGTAACCACATCCATTCAATCTGTCATTCACAGGGAAGGCAACCTCCTTAACCCAGAAGATCAAAAAAGCCCAAACAGGCCCAGACCAGAACCTAAAACCCCTAATCAGTCAAAACCCCATTTCGCGTTACAGGGAGTGACAGACAAAACAATCATGGCGGCGCAGTGGTGGCGCTCCGCCGCCGGCCACCTCCGAACGGTGGCGGCGAGCCGTGGGTCCTCGTCGGGATTACAGCGCAGTCATTACCATACGATCCAAGCCATCCCAAGGGAGTGCAGTGGCAGCAAAGTCTCAGCGAGAGACCGAATGCAAGGTCGAATACCTTGCGTCGTTTTCTTCCAGAACCTTCTAGAAAAAACCCCCGAAGCTCGATCGGAATCGAAGAAGCACTTGCTCACCGTCGAGAAGAAGCAGATTAAGGCCATTCTCAACTCCGTCGACGCGCCTTTCTTCTGCTCCACGCGCTTCCCGCTCCAGATCCGTGCCGGTTCTGGATCCTCGCATATGCTCGAATCCGGAACCGTGTTACCTATCAAGATTCATAGGGACGAAGAGAGTGGGCAGATTCTGAATTTGGTGTTTGTTTGGGCTGAGGATGGAATGAAATTGAAGGTGGATGTGCCTGTTGTTTTCAAAGGGGAAGATGCTTGTCCTGGTATTCAGAAAGGAGGAATTTTGAATAAGATCAGACCTAGTCTAAAATTTCTTTGTCCATCTGAGCACATTCCTTCAAAAATTGTTGTGGATGTGAGCAATCTAGATATTGAAGATAGAATATTCATGCGCGATATTGAGGTCCATCCATCCTTGAAGCTTCTGAGTAAGAATGAAAACATGCCCATATGTAAAATAGTTCCAACAAGTTTGGGAAACAAAGAACCTATTGAGCCGTAA 1212 0.4884 MSRILESEKPQVLKKVETESGLRKGFRRSRFEAFRAVFGEKPGVLVRDRGSNPNSGFHGSTRVKAGLMTSRSDRDDKVYSDPTDFSPTRWRTTIAIAAAIVIVSPNVTTSIQSVIHREGNLLNPEDQKSPNRPRPEPKTPNQSKPHFALQGVTDKTIMAAQWWRSAAGHLRTVAASRGSSSGLQRSHYHTIQAIPRECSGSKVSARDRMQGRIPCVVFFQNLLEKTPEARSESKKHLLTVEKKQIKAILNSVDAPFFCSTRFPLQIRAGSGSSHMLESGTVLPIKIHRDEESGQILNLVFVWAEDGMKLKVDVPVVFKGEDACPGIQKGGILNKIRPSLKFLCPSEHIPSKIVVDVSNLDIEDRIFMRDIEVHPSLKLLSKNENMPICKIVPTSLGNKEPIEP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g02010 403 CDD Ribosomal_L25_TL5_CTC 190 249 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pumo4g02010 403 SUPERFAMILY Ribosomal protein L25-like 195 392 IPR011035 GO:0006412
Pumo4g02010 403 MobiDBLite consensus disorder prediction 118 146 - -
Pumo4g02010 403 Pfam Ribosomal protein TL5, C-terminal domain 308 393 IPR020057 -
Pumo4g02010 403 Gene3D Ribosomal protein L25, beta domain 307 385 IPR037121 -
Pumo4g02010 403 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 184 393 - -
Pumo4g02010 403 FunFam Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein 306 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g02010 Pumo-Chr4 27507613 27515605 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g02010 K02897 - gmx:100802599 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g02010 4 27507613 27515605 Pumo4g02010 4 27507613 27515605 ECH