Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01798 ATGGCCATGAGACCTGAGAGTGAAAAAGACCCTCAACAACCACTTTCACGTGGCTTTCTGGACACAGTACATGAAATCACCAGAATCTATAGGTCACTGCCACCTAGACCTTCTATCGAAGAGGTGGAAGCTGCCACGTCCACTGTGGATACCCTCAACAACGAGGAACAAACCAAACTCAACGAATTCTCAATGCAACAACCTCCCCACGATGTCCCTGAGGACCTCTTCTCTGTCCTGCAACAACTCAAGAAGACCATGGTCTTGTTCCACACTCATCAACAGAGGAGAGAGGCACTTCACCTTCTTGAGCTTGAAAAGATGTTTCAAACCTTCGGTGATCTCATTCAGAGGGCTTCTGAATTGGTTTCTGGAGATACCCAGAAGCAGAACCTTGCCACTATACCCGAAGAACACGTGGTGATCACTGATCAAAGTGAAACTTTGGTGAAGGAAGAGGAAGAACCACACAAGAATGATTTCCAAGTGGTAAAGCCTTCCTTGTCTGCAGGGGATGGAAGCACTGAGAAATTAAGTCTAATGAAAGTGGCTACTTTTATTGAAAGTTGTGCTGGTAGTGGAGCTACAACCCTTGAGCTTAGAGGGAAGTTGGTGGATCAGATGGAATGGTTGCCGGTGTCAATTGGGAAATTATCTGATGTCACTGAAATGGACCTATCTGAAAACAGACTCATGGCTCTTCCAACAACAATTGGGGGTCTCAAGGCCTTAACAAAGCTTGATCTACACTCAAACCAACTTATAAACCTTCCCCACTCATTTGGTGAATTAATCAACCTTGTTGAACTTGACCTCCATGCCAACAGATTGAGATCACTTCCTGCTACTTTTGGAAACTTGATAAACCTCACTGCTCTAGACTTAAGCTCAAACGGGTTCACAGATTTACCAGAGACAATTGGGAATTTGAGCAGCTTGAAGAGATTGAATGTTGAGACCAACGAACTTGAGGAACTGCCTCACACAATTGGAAATTGCTCATCACTATCTGTGCTTAAGTTAGATTTCAATCAGCTCAAGGCCCTTCCTGAGGCAATTGGGAAGCTTGAACGGTTGGAAATTCTCACTTTGCACTATAATAGAGTCAAGAGGTTGCCTTCCACAATGGGCAATCTATGCAGTTTGAAGGAACTTGATGTTAGCTTTAATGAACTTGAATTTGTACCAGGGAGCCTGTGTTTTGCAACTAATTTGAAGAAATTAAACTTGGGAAAGAACTTTGCGGACCTAAGAGCCTTGCCAACATCAATTGGAAATCTTGAAATGCTTGAGGAGTTGGACATAAGTGATGATCAAATAAAAGCTCTACCAGAGTCTTTCAGGTTCTTGTCCAAGTTGAGAGTTTTTAGGGCTGATGAGACCCCCCTTGAGGTGCCACCCAGACAATTGGTCAAGTTGGGTGCTCAGGAAGTTGTGCAGTATATGGCTGATTTTGTCACCAAGAGGGATGCAAAACTTGTGCCATCAAAGAAGAAAAAGAAGGGCTTTTGGTTCTGGTTTTGCTCCATATTTTGCCCTCAGCTGAAATGA 1551 0.4371 MAMRPESEKDPQQPLSRGFLDTVHEITRIYRSLPPRPSIEEVEAATSTVDTLNNEEQTKLNEFSMQQPPHDVPEDLFSVLQQLKKTMVLFHTHQQRREALHLLELEKMFQTFGDLIQRASELVSGDTQKQNLATIPEEHVVITDQSETLVKEEEEPHKNDFQVVKPSLSAGDGSTEKLSLMKVATFIESCAGSGATTLELRGKLVDQMEWLPVSIGKLSDVTEMDLSENRLMALPTTIGGLKALTKLDLHSNQLINLPHSFGELINLVELDLHANRLRSLPATFGNLINLTALDLSSNGFTDLPETIGNLSSLKRLNVETNELEELPHTIGNCSSLSVLKLDFNQLKALPEAIGKLERLEILTLHYNRVKRLPSTMGNLCSLKELDVSFNELEFVPGSLCFATNLKKLNLGKNFADLRALPTSIGNLEMLEELDISDDQIKALPESFRFLSKLRVFRADETPLEVPPRQLVKLGAQEVVQYMADFVTKRDAKLVPSKKKKKGFWFWFCSIFCPQLK 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01798 516 PANTHER LEUCINE-RICH REPEAT-CONTAINING 94 345 - -
Pumo4g01798 516 SMART LRR_bac_2 356 375 - -
Pumo4g01798 516 SMART LRR_bac_2 218 237 - -
Pumo4g01798 516 SMART LRR_bac_2 310 329 - -
Pumo4g01798 516 SMART LRR_bac_2 264 283 - -
Pumo4g01798 516 SMART LRR_bac_2 427 446 - -
Pumo4g01798 516 SMART LRR_bac_2 287 306 - -
Pumo4g01798 516 SMART LRR_bac_2 241 260 - -
Pumo4g01798 516 SMART LRR_bac_2 333 352 - -
Pumo4g01798 516 SMART LRR_bac_2 379 398 - -
Pumo4g01798 516 SMART LRR_typ_2 218 240 IPR003591 -
Pumo4g01798 516 SMART LRR_typ_2 334 355 IPR003591 -
Pumo4g01798 516 SMART LRR_typ_2 379 402 IPR003591 -
Pumo4g01798 516 SMART LRR_typ_2 356 378 IPR003591 -
Pumo4g01798 516 SMART LRR_typ_2 287 309 IPR003591 -
Pumo4g01798 516 SMART LRR_typ_2 427 449 IPR003591 -
Pumo4g01798 516 SMART LRR_typ_2 264 286 IPR003591 -
Pumo4g01798 516 SMART LRR_typ_2 310 333 IPR003591 -
Pumo4g01798 516 SMART LRR_typ_2 241 263 IPR003591 -
Pumo4g01798 516 Pfam Leucine rich repeat 289 346 IPR001611 GO:0005515
Pumo4g01798 516 Gene3D Ribonuclease Inhibitor 174 492 IPR032675 -
Pumo4g01798 516 ProSiteProfiles Leucine-rich repeat profile. 289 310 IPR001611 GO:0005515
Pumo4g01798 516 FunFam Plant intracellular Ras-group-related LRR protein 4 177 485 - -
Pumo4g01798 516 SUPERFAMILY L domain-like 189 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01798 Pumo-Chr4 24173028 24175393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01798 131 442 Receptor kinase-like Gene Family AT3G11080 30.060 2.17e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01798 - - gmx:100798442 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01798 4 24173028 24175393 Pumo4g01798 4 24173028 24175393 ECH