Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01765 ATGGCCGAATCGGTGGAGCTGCCGAGTCGCTTGGCGATTCTCCCGTTCAGGAACAAGGTCCTCTTACCGGGCGCCATCATCAGAATCCGCTGCACTTCCCCCACCAGTGTGAAGTTGGTGGAACAAGAACTTTGGCAGCGAGAAGAGAAGGGGTTGATTGGCATCCTGCCAGTGCGTGATGCTGCTGAAATTAAGCCAGTGGGTCCCGCTGTATCTGAAGGAGCTGATTCTACAAACCAGAACTCAAAAGTTCAGGGCAGTTCATTGGATTCTCATAAGCTTGATACAAAAAAGCAGAATGATGTTGTTCATTGGCATAACAGGGGGGTAGCTGCCCGACCATTACATTTATCAAGGGGAGTGGAGAAACCAAGTGGGAGGGTCACATACACAGTTGTTCTTGAAGGTTTGTGCAGATTTAGTGTCCAGGAACTGAGCACAAGAGGAATATACCACACTGCAAAGATAACTTCCCTTGAAATGACTAAGACTGAGCTGGAACAAGTGGAGCAAGACCCAGATTTCATAATGTTGTCTCGCCAATTTAAAGCCACTGCAATGGAGCTTATTTCTGTTTTGGAGCTGAAACAAAAAACTGGTGGAAGGACAAAAGTCCTTTTGGACAACGTTCCAGTTCACAAGTTGGCTGATATATTTGTTGCTAGTTTTGAGATAAGTTTTGAAGAACAATTATCTATGCTGGATTCAGTTGACCCCAAAGTGAGGCTTTCAAAAGCAACTGAGTTAGTTGACAGGCACTTACAGTCAATTCGTGTAGCTGAGAAAATTACACAAAAGGTTGAAGGACAGTTGTCAAAATCTCAAAAAGAATTTCTTTTGCGCCAGCAGATGAGGGCTATAAAAGAGGAACTTGGTGATAATGATGATGATGAGGATGACCTGGCTGCCCTCGAAAGAAAGATGCAAAGTGCAGGAATGCCGCAGAATATATGGAAACATGCACACAGAGAGTTGAGGAGGCTTAAAAAGATGCAGCCTCAGCAACCAGGGTATAGCAGTTCGCGGGTTTACCTAGAGCTTCTCGCTGATCTGCCCTGGCAGAAGGCCAGTGAAGAGATTGAACTGGACTTGAGAGCTGCACAGAAGCGACTGGACAGTGATCACTATGGTTTAGTGAAGGTTAAGCAACGGATAATTGAGTACCTGGCGGTTCGCAAGCTTAAACCAGATGCAAGGGGTCCTGTGTTGTGCTTTGTTGGACCACCAGGTGTTGGGAAAACATCATTGGCATCCTCCATTGCTGCTGCTTTGGGAAGAAAATTTCTGCGCATATCCCTTGGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATATGTTGGAAGCATGCCTGGGCGGCTTATAGATGGATTAAAGAGAGTAGGTGTCTGCAATCCCGTCATGTTGCTTGATGAAGTTGACAAGACAGGTTCTGATATTCGTGGTGATCCAGCTTCAGCATTGCTAGAGGTTCTGGATCCAGAACAAAATAAATCATTCAATGATCACTATTTGAATGTTCCATTTGATCTATCCAAGGTAGTTTTTGTGGCTACAGCAAATAGGTTGCAACCCATTCCTCCACCACTTCGTGATAGGATGGAAGTAATTGAGCTTCCTGGATATACACCTGAGGAAAAGTTCCACATAGCCATGCGGCATTTGATTCCAAGAGTTTTAGAGCAGCATGGATTGAGTTCTGAGTTTCTTCAGATTCCTGAGGCAATGGTGAAGCTTGTCATTCAGAGATATACTAGGGAAGCTGGTGTGCGAAATTTGGAGAGGAATCTAGCTGCCTTGGCTCGAGCTGCTGCAGTAAGAGTTTTAGAGCAAGAACAAGTAGTTCCATTAAACAAAGGGATGCAGGGACTTGCTACACCACTTGTGGAAAACAGACTTGCTGATGGAACTGAAGTTGAAATGGAAGTGATACCAATGGGTGTCAATAGTCGGGACATCTCAAACACTTTTAGGATTGCCTCTCCATTGGTTGTTGACGAAACTATGCTTGAAAAAGTGCTTGGGCCCCCAAGATTTGATGGTAGAGAAGCTGCAGAACGTGTGGTTACCCCTGGGGTCTCTGTTGGGCTAGTTTGGACTGCTTTTGGTGGAGAAGTTCAGTTTGTGGAGGCTACAGCAATGGTTGGGAAGGGTGAATTGCATCTCACTGGACAACTTGGTGATGTAATAAAAGAATCAGCTCAGATTGCACTAACATGGGTAAGGGCAAGGGCAACTGATCTTAGGCTGGCTGCTACAGAGGGATTTAATCTTTTGGAGGGCCGTGATGTACACATACATTTTCCTGCAGGTGCTGTACCTAAAGATGGACCCTCAGCAGGTGTGACTTTGGTCACGGCTTTGGTATCACTTTTCAGTCAGCAAAGGGTGAGATCAGACACGGCTATGACTGGAGAGATGACATTGAGGGGTCTTGTTCTACCTGTTGGTGGTGTCAAGGATAAGATATTAGCTGCACATCGTTGTGGTATTAAGAGAGTTATCCTGCCCGAAAGGAACTTGAAGGACTTGGTTGAAGTACCATCGTCAGTGCTAGCCAATTTGGAGATCCTGCTTGCTAAACGAATGGAAGATGTGTTAGAGCATGCTTTTGATGGTGGGTGCCCTTGGAGGCAACACTCAAAGTTATAG 2661 0.4551 MAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPTSVKLVEQELWQREEKGLIGILPVRDAAEIKPVGPAVSEGADSTNQNSKVQGSSLDSHKLDTKKQNDVVHWHNRGVAARPLHLSRGVEKPSGRVTYTVVLEGLCRFSVQELSTRGIYHTAKITSLEMTKTELEQVEQDPDFIMLSRQFKATAMELISVLELKQKTGGRTKVLLDNVPVHKLADIFVASFEISFEEQLSMLDSVDPKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLAALERKMQSAGMPQNIWKHAHRELRRLKKMQPQQPGYSSSRVYLELLADLPWQKASEEIELDLRAAQKRLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFLRISLGGVKDEADIRGHRRTYVGSMPGRLIDGLKRVGVCNPVMLLDEVDKTGSDIRGDPASALLEVLDPEQNKSFNDHYLNVPFDLSKVVFVATANRLQPIPPPLRDRMEVIELPGYTPEEKFHIAMRHLIPRVLEQHGLSSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVLEQEQVVPLNKGMQGLATPLVENRLADGTEVEMEVIPMGVNSRDISNTFRIASPLVVDETMLEKVLGPPRFDGREAAERVVTPGVSVGLVWTAFGGEVQFVEATAMVGKGELHLTGQLGDVIKESAQIALTWVRARATDLRLAATEGFNLLEGRDVHIHFPAGAVPKDGPSAGVTLVTALVSLFSQQRVRSDTAMTGEMTLRGLVLPVGGVKDKILAAHRCGIKRVILPERNLKDLVEVPSSVLANLEILLAKRMEDVLEHAFDGGCPWRQHSKL 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01765 886 PIRSF Lon_proteas 1 626 IPR004815 GO:0004176|GO:0005524|GO:0006508
Pumo4g01765 886 PIRSF Lon_proteas 653 877 IPR004815 GO:0004176|GO:0005524|GO:0006508
Pumo4g01765 886 SMART AAA_5 399 544 IPR003593 GO:0016887
Pumo4g01765 886 FunFam Lon protease homolog 2, peroxisomal 364 542 - -
Pumo4g01765 886 FunFam Lon protease homolog 302 351 - -
Pumo4g01765 886 Gene3D - 543 682 - -
Pumo4g01765 886 Coils Coil 287 307 - -
Pumo4g01765 886 Gene3D - 303 351 - -
Pumo4g01765 886 SUPERFAMILY Ribosomal protein S5 domain 2-like 694 874 IPR020568 -
Pumo4g01765 886 Gene3D - 1 160 IPR046336 -
Pumo4g01765 886 SUPERFAMILY PUA domain-like 10 251 IPR015947 -
Pumo4g01765 886 CDD RecA-like_Lon 364 545 - -
Pumo4g01765 886 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 8 882 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Pumo4g01765 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 829 847 - -
Pumo4g01765 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 694 710 - -
Pumo4g01765 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 776 795 - -
Pumo4g01765 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 407 426 - -
Pumo4g01765 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 806 825 - -
Pumo4g01765 886 Gene3D - 693 878 IPR014721 -
Pumo4g01765 886 Gene3D - 364 542 IPR027417 -
Pumo4g01765 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 617 IPR027417 -
Pumo4g01765 886 MobiDBLite consensus disorder prediction 73 89 - -
Pumo4g01765 886 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 886 IPR027501 GO:0004252|GO:0006515
Pumo4g01765 886 SMART lon_5 10 252 IPR003111 -
Pumo4g01765 886 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 252 IPR003111 -
Pumo4g01765 886 NCBIfam endopeptidase La 13 874 IPR004815 GO:0004176|GO:0005524|GO:0006508
Pumo4g01765 886 Gene3D - 171 295 - -
Pumo4g01765 886 FunFam Lon protease homolog 2, peroxisomal 688 879 - -
Pumo4g01765 886 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 779 787 IPR008268 GO:0004176|GO:0004252|GO:0006508
Pumo4g01765 886 Pfam Lon protease (S16) C-terminal proteolytic domain 668 874 IPR008269 GO:0004176|GO:0004252|GO:0006508
Pumo4g01765 886 ProSiteProfiles Lon N-terminal domain profile. 11 252 IPR003111 -
Pumo4g01765 886 MobiDBLite consensus disorder prediction 68 92 - -
Pumo4g01765 886 FunFam Lon protease homolog 2, peroxisomal 170 295 - -
Pumo4g01765 886 Pfam ATPase family associated with various cellular activities (AAA) 403 540 IPR003959 GO:0005524|GO:0016887
Pumo4g01765 886 ProSiteProfiles Lon proteolytic domain profile. 691 876 IPR008269 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01765 Pumo-Chr4 23242005 23253188 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01765 K01338 - gmx:100789982 1650.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01765 4 23242005 23253188 Pumo4g01765 4 23242005 23253188 ECH