Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01759 ATGGCTCTAACACTTCGTTCTTCAACTTCTTTTATTAATCAGAAGGAAACCAAAGTCCTTAAAACTTCTGATGATGTCCCTGCGATAGTTAGTTTTGCAAAATTTAAGCCATCATTCCTCCGTCTCCGGGCGAAAAATTCCATGCAAGAAGCGCATCACGCTTGTGAGAACAGCTTCAATGAAGCAAGTAGAAACGAGAAATGGGAGAAGGTGCTTGCTCCATCGGTTGCGCACAACCACAATGATTCGAAGAGAGTCCCTGTGTATGTGATGCTGCCACTAGACACGGTAACAATGGGAGGAAGCTTGAATAAGCCTAGAGCGATGAATGCAAGTTTGATGGCCCTGAAGAGTGCAGGAGTTGAAGGGGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAAGATGGGCCTTTGAAGTACAACTGGGAAGCCTATGCCGAACTTGTGCAGATGGTGCAAATGCATGGTTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGGGGGAATGTTGGAGACAATTGCTGCATTCCTCTACCACCATGGGTGCTGGAAGAAATAAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAGGAGGAATCCTGAGTACATCTCCTTGGGCTGTGATTCAGTTCCTGTTCTAAGAGGAAGGACTCCCCTTCAAGTCTACGCTGACTACATGAGAAGCTTTCGTGACAGATTCAGAGATTACTTGGGCAGTGTTATCGTGGAAATACAAGTGGGGATGGGTCCTTGTGGAGAGCTGAGATATCCATCTTATCCAGAAACCAATGGAACTTGGAGGTTTCCCGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCGTCCTTGGCAGCAGCAGCAGAAGCCATTGGACAGAAAGAATGGGGAGGAGGTGGACCCCATGACTCAGGCCAGTACAATCAATTTCCTGAGGACACTGGATTTTTCAAAAGGGAAGGGACATGGAACACTGAATATGGACAGTTCTTTCTGGAATGGTACTCTGGTAAATTGCTGGAACACGGTGAGAGTATCCTCGTATCTGCTAAAGGAATATTCCAAACATCTGGGGTGAAACTATCAGGGAAAGTTGCTGGAATCCATTGGCATTACGGAGCAAGGTCGCACGCAGCTGAACTAACCGCCGGCTACTATAACACGCGAAATAACGACGGATATCTGCCTATAGCAACGATGCTGGCAAAACATGGAGTTGTCTTCAATTTCACCTGCATGGAAATGAAGGACAGAGAGCAGCCTGACTTTGCTAACTGCTCACCCGAAGGGTTAGTTCACCAGGTGAAGATGGCAACAACAACAGCTAGAGCAGAACTTGCTGGGGAAAATGCATTGGAGAGATATGATGCAGATGCATATGCTCAAGTTTTATCAACAAGTAAGTCAGCATCCGGCACCGGATTGGCGGCATTCACATATCTAAGAATGAACAAGAGGTTGTTTGAAGGTGATAACTGGCGGCACCTAGTGGATTTTGTGAGAAGCATGTCTGAGGGTGGTCGGAGAGAGAGACTTCCGGCATCTGATTCCCACGGGAGTGATCTTTATGTTGGGCACATCAAAGCAACACAGGAGAAGCACACACAAGAGGCTGCTCTTGTGTAG 1647 0.4663 MALTLRSSTSFINQKETKVLKTSDDVPAIVSFAKFKPSFLRLRAKNSMQEAHHACENSFNEASRNEKWEKVLAPSVAHNHNDSKRVPVYVMLPLDTVTMGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEAYAELVQMVQMHGLKLQVVMSFHQCGGNVGDNCCIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSVPVLRGRTPLQVYADYMRSFRDRFRDYLGSVIVEIQVGMGPCGELRYPSYPETNGTWRFPGIGEFQCYDKYMKASLAAAAEAIGQKEWGGGGPHDSGQYNQFPEDTGFFKREGTWNTEYGQFFLEWYSGKLLEHGESILVSAKGIFQTSGVKLSGKVAGIHWHYGARSHAAELTAGYYNTRNNDGYLPIATMLAKHGVVFNFTCMEMKDREQPDFANCSPEGLVHQVKMATTTARAELAGENALERYDADAYAQVLSTSKSASGTGLAAFTYLRMNKRLFEGDNWRHLVDFVRSMSEGGRRERLPASDSHGSDLYVGHIKATQEKHTQEAALV 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01759 548 ProSitePatterns Beta-amylase active site 1. 167 175 IPR018238 GO:0000272|GO:0016161
Pumo4g01759 548 Pfam Glycosyl hydrolase family 14 89 506 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 Gene3D Glycosidases 77 545 - -
Pumo4g01759 548 PRINTS Plant beta-amylase signature 404 414 IPR001371 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Plant beta-amylase signature 486 500 IPR001371 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Plant beta-amylase signature 245 254 IPR001371 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 383 394 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 120 134 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 141 159 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 330 349 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 277 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 438 460 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 163 184 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 366 382 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 401 424 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 52 519 IPR001554 GO:0000272|GO:0016161
Pumo4g01759 548 SUPERFAMILY (Trans)glycosidases 84 513 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01759 Pumo-Chr4 23130807 23133500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01759 1 548 Glycoside Hydrolase AT4G17090 71.767 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01759 K01177 - gmx:100818063 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01759 4 23130807 23133500 Pumo4g01759 4 23130807 23133500 ECH