Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01569 ATGATCTCCATGCTCTTCCTCGGCCACCTCGGAGAACTCGCTCTCGCAGGTGGCTCCTTAGCCATCGGATTCGCCAACATCACCGGCTACTCTGTTCTGTCTGGCCTGGCCATGGGCATGGAACCCATCTGCGGCCAAGCCTTCGGCGCCAAACGCTTCAAACTCCTCGGCCTCACCATGCAGAGAACCGTCCTCCTTCTTCTCATAACCTCATCCCTCATCTCATTCTTCTGGCTCAACATGAAGAAAATATTGCTCCTTTGCGGCCAAGAAGAGGACATAGCCAACGAGGCACAATTCTATATATTCTACTCTCTCCCTGACCTTGTGTTGCAATCGCTGCTGCACCCTTTGAGAATCTACCTCCGAAGCCAATCCATAACGCTTCCTCTCACGTGCTGCGCCGCGATTTCCATCCTCCTCCACGTGCCCATCAACTACCTCTTGGTCAACGTCCTCAACCTCGGAATCAAAGGCATCGCGCTGAGCGCTGTTGTCACAAACCTCAACCTCGTGGGGTCGTTGGTTATTTATGTAATTGTGTCGGGCACTCACGAGAAAACGTGGCCGGGTATTTCTCCTCGCGAGTGCTTCAAGGGGTGGAAGACGCTCCTGAATCTCGCGATTCCGAGCTGCGTCTCGGTTTGTCTCGAATGGTGGTGGTACGAGATAATGATTTTGCTGTGCGGGTTGTTGGCTAACCCTCATGCAAGTGTTGCGTCCATGGGGGTTTTGATTCAAACCACGGCTTTGATATACATTTTTCCGTCTTCTTTGAGTTTCGGAGTGTCCACGCGCGTTGGAAACGAGTTGGGCGCGGGGAATCCTCGGAGGGCGAAACTGGCGGCGATTGTGGGCCTCTGTTTCAGTTTTGTGTTTGGGCTCTCTGCTTTGGTGTTTGCAATTTCGGTGAGGAACGTTTGGGCCTCGATGTTCACACTGGATGGGCAAATCATTGCTTTGACGTCGGCGGTGTTGCCTATTATTGGGCTTTGCGAGCTCGGGAACTGTCCCCAAACGACGGTGTGCGGCGTTTTGAGAGGGACAGCGAGGCCGAAATTGGGGGCCAACATAAACTTGGGCTGCTTCTACCTCGTTGGCATGCCGGTTGCGGTGTGGTTGGGGTTCTTTGCAGGGTTTGACTTCAAAGGGTTGTGGCTGGGGATGTTGGCAGCGCAAGGGTCGTGTATGGTGACAATGATGTTCGTGTTGGCAAGGACCAATTGGGAGGGTCAAGCGCAAAGAGCTAAGGAGCTCACGTCTTGCGATACTAGTATTGAAGAGACAAAACTAGTCGAAGAGGAAGATGAGAAAGGGTTTTTGGGATCATGTGCCACCAAACAAGGCTCTGATTTGGTTGTTTGA 1365 0.5267 MISMLFLGHLGELALAGGSLAIGFANITGYSVLSGLAMGMEPICGQAFGAKRFKLLGLTMQRTVLLLLITSSLISFFWLNMKKILLLCGQEEDIANEAQFYIFYSLPDLVLQSLLHPLRIYLRSQSITLPLTCCAAISILLHVPINYLLVNVLNLGIKGIALSAVVTNLNLVGSLVIYVIVSGTHEKTWPGISPRECFKGWKTLLNLAIPSCVSVCLEWWWYEIMILLCGLLANPHASVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAGNPRRAKLAAIVGLCFSFVFGLSALVFAISVRNVWASMFTLDGQIIALTSAVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANINLGCFYLVGMPVAVWLGFFAGFDFKGLWLGMLAAQGSCMVTMMFVLARTNWEGQAQRAKELTSCDTSIEETKLVEEEDEKGFLGSCATKQGSDLVV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01569 454 CDD MATE_eukaryotic 1 415 IPR045069 GO:0042910|GO:1990961
Pumo4g01569 454 NCBIfam MATE family efflux transporter 1 386 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pumo4g01569 454 Pfam MatE 1 148 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pumo4g01569 454 Pfam MatE 210 373 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pumo4g01569 454 PANTHER MULTIDRUG RESISTANCE PROTEIN 1 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01569 Pumo-Chr4 19787965 19790119 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01569 K03327 - gmx:100778250 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01569 4 19787965 19790119 Pumo4g01569 4 19787965 19790119 ECH