Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01543 ATGATGAACAACAACATCAACACCAATTCAACCAAGAATGCTGCAACGCCGTCGTTTTTCACCAATCCGGGGGCACCCTCCATCCCCATGAACCACCCACCATCCCACCTTCTCTCCCAAACGCAGCCTCAACCACAAGGTGCCACGTCACACTTCCACGGCCACTTTCAGCTTTCACAACCCCAAACCCACGTGGTCGCACAACAACAACAACAACCACACCCTCACCCTCACCCTCACCCTCACCCGCACCCTCACCCTCACCCACAGGTGCACAGCAATGCCAACACCAACGCCAACGTGGCAGCACCTGCGCCTCCCAAGCGTGCAAATCAGAAACCCCCTTCACGCCCTCAAGGTTCCTCCAACGCCAGCCAATCCTCTGCGTTCAAGACCATGGAACTTACCGTGGCGCCTCCGCGGAGAAAGAGAAGCTTCCCCGAGAAGCTAATTCCGGAAAAGGTGGCCAAGCTTGTGCCTGAGTCTGCTATTTACGCTAAGTTGCTTGAACTCGAGACTCAAATAGATTCTGCTTTGGTTAGGAAGAAAATTGATATGCAGGAAGCTGTTAGAAACCCTCGCTGCGTTAGAAAAACGCTTAGAATTTATGTGTATAATACTTTTTCGAGTCAGGTGAAAGTGGAACCTGGGAAGAATGATGTGGAGGAGCCTTCATGGGCGCTTAGGATAACGGGAAGGGTGTTGGAAGATGGTAAGGATTCCGTGGCAGAAGGAATTTCGCCCAAGGAATATCCAAAATTCTCGGCTTTCTTCAAGAAGATTACCATATACTTGGATCAGGGTTGTTATCCTGATAACCATGTGGTTGTGTGGGATAGTGCTCGTTCGTCTGCGCAGCGCGATGGTTTTGAGGTGAAGAGGAAAGGAGATAAGGAATTCACTGCTGTGGTGAGAATGGCAATGAATTATTCGCCTGACAAGTTTGTGGTTTCAGCACAACTGGCTAGAGTTTTAGGGGTTGAGTTTGACTCGCGCGCTAGGATCATAGCTGCTCTTTGGCACTATGTGAAGTCTAAGAAGTTGCAGAGCCCGAACGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAAAGGGTGTTTGGGGAGGAGAAGATGAAATTCTCTGTGGCTTCGCAGAAGATATTGCAGCATTTGTCACCGCCACAGCCTATACACCTGGAGCATAAAATCAAGCTTTCTGGAAATGGTCCAGCCGGAAGTACGTGTTATGATGTGCAGGTTGATGTGCCTCTTCCACTAGAGAAGGATATGTCTGCGTTCTTGGCAAGCACTGAGAGGCACAAAGATATTGATGCTTTTGATGAACTGATCTGTGATTCCATAAAGAAGATCCATGAACATCATAGGAGACGGGCATTCTTTCTCGGCTTTAGTCAGTCCCCAGCAGAGTTTATTAATGCTTTGATCGCTTCTCAGAGCAAGGATCTGAAGCTCGTTGCTGGAGATGTGAGCCAGAATGTTGAAAATGAACGACGTGCTGAATTCTACACTCAACCGTGGGTTGAGGATGCTGTCGTTCGCTACCTGACCCGGAAAAATGCTCGAACTGATGCTCCTGGAAACGTCTGA 1590 0.4906 MMNNNINTNSTKNAATPSFFTNPGAPSIPMNHPPSHLLSQTQPQPQGATSHFHGHFQLSQPQTHVVAQQQQQPHPHPHPHPHPHPHPHPQVHSNANTNANVAAPAPPKRANQKPPSRPQGSSNASQSSAFKTMELTVAPPRRKRSFPEKLIPEKVAKLVPESAIYAKLLELETQIDSALVRKKIDMQEAVRNPRCVRKTLRIYVYNTFSSQVKVEPGKNDVEEPSWALRITGRVLEDGKDSVAEGISPKEYPKFSAFFKKITIYLDQGCYPDNHVVVWDSARSSAQRDGFEVKRKGDKEFTAVVRMAMNYSPDKFVVSAQLARVLGVEFDSRARIIAALWHYVKSKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKILQHLSPPQPIHLEHKIKLSGNGPAGSTCYDVQVDVPLPLEKDMSAFLASTERHKDIDAFDELICDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDVSQNVENERRAEFYTQPWVEDAVVRYLTRKNARTDAPGNV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01543 529 MobiDBLite consensus disorder prediction 114 133 - -
Pumo4g01543 529 Gene3D SWIB/MDM2 domain 307 392 IPR036885 -
Pumo4g01543 529 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 131 484 - -
Pumo4g01543 529 MobiDBLite consensus disorder prediction 1 141 - -
Pumo4g01543 529 MobiDBLite consensus disorder prediction 33 73 - -
Pumo4g01543 529 SUPERFAMILY SWIB/MDM2 domain 306 395 IPR036885 -
Pumo4g01543 529 MobiDBLite consensus disorder prediction 1 25 - -
Pumo4g01543 529 Pfam SWIB/MDM2 domain 314 385 IPR003121 -
Pumo4g01543 529 CDD SWIB_like 317 385 - -
Pumo4g01543 529 ProSiteProfiles SWIB/MDM2 domain profile. 310 387 IPR003121 -
Pumo4g01543 529 SMART swib_2 311 390 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01543 Pumo-Chr4 19327836 19331281 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pumo4g01543 SWIB 7.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01543 K11650 - gmx:100817271 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01543 4 19327836 19331281 Pumo4g01543 4 19327836 19331281 ECH