Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01510 ATGGAAGCTGTGTGTGGAACTGGAAGCAGTGTTTGGGTCACATCCTCTCTTTCACGCTCACCAACACTACCCAAGACCACTATCCCTCTACCACGCGCCACTTACCAACACCTAACAGCATTTCCTTCACAATCTCATCTCTTCTCATATCACCCTCCACGCTATGCTAAAACCCTCCGCGCCAGAACCGCCTCCAAACCCGCCATTTTCCTACCCCACTTAATTGCTTCTTTGGAACAAGTTGACCAGACTTACATAATGGTGAAGCCTGATGGTGTGCAACGTGGCCTCGTGGGAGAAATTATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTAACTGGCTTGAAGCTCTTCCAGTGCTCAAGGGAATTGGCTGAGGAGCATTACAAGGACCTAAAACAAAAGTCATTCTTCCCCAAGCTGATTGACTATATTACTTCAGGTCCTGTTGTGTGTATGGCTTGGGAGGGTGTTGGAGTAGTGGCATCGGCACGTAAGCTTATAGGGGCTACAGATCCTCTTCAAGCTGAACCAGGCACTATAAGAGGAGACCTTGCTGTTCAAACAGGAAGGAATATTGTTCATGGCAGTGACAGCCCTGAGAATGGCAAGCGTGAAATAGCTCTATGGTTCAAGGAAGGCGAATTATGCGAATGGACCCCTGTCCAAGCACCATGGCTGAGAGAATAA 690 0.4783 MEAVCGTGSSVWVTSSLSRSPTLPKTTIPLPRATYQHLTAFPSQSHLFSYHPPRYAKTLRARTASKPAIFLPHLIASLEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSRELAEEHYKDLKQKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIALWFKEGELCEWTPVQAPWLRE 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01510 229 ProSitePatterns Nucleoside diphosphate kinases active site. 192 200 IPR023005 -
Pumo4g01510 229 Gene3D - 77 229 IPR036850 -
Pumo4g01510 229 FunFam Nucleoside diphosphate kinase 78 229 - -
Pumo4g01510 229 PRINTS Nucleoside diphosphate kinase signature 128 147 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Pumo4g01510 229 PRINTS Nucleoside diphosphate kinase signature 84 106 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Pumo4g01510 229 PRINTS Nucleoside diphosphate kinase signature 192 211 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Pumo4g01510 229 PRINTS Nucleoside diphosphate kinase signature 169 185 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Pumo4g01510 229 PRINTS Nucleoside diphosphate kinase signature 148 165 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Pumo4g01510 229 SMART ndk_5 81 218 IPR034907 -
Pumo4g01510 229 Hamap Nucleoside diphosphate kinase [ndk]. 81 216 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Pumo4g01510 229 SUPERFAMILY Nucleoside diphosphate kinase, NDK 82 227 IPR036850 -
Pumo4g01510 229 Pfam Nucleoside diphosphate kinase 83 215 IPR034907 -
Pumo4g01510 229 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 75 228 - -
Pumo4g01510 229 CDD NDPk_I 83 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01510 Pumo-Chr4 19020454 19024707 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01510 K00940 - gmx:100500478 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01510 4 19020454 19024707 Pumo4g01510 4 19020454 19024707 ECH