Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01507 ATGAAGGCCTTGTACTGCATGTCCACTCGAAATTTCAAGAAGGCTGCCAAGTTGTTTTTGGATTCTATTTCAACCTTCACAACCTATGAACTTTTTCCCTATGACACTTTTATATTTTATACGGTTTTGACAAGCATTATATCGTTGGATAGAGTTTCCTTAAAGCAAAAGGTTGTAGATGCTCCAGAGATCTTGACAGTGATTGGCAAAATCCCATATCTTTCAGAGTTTTTGAACTCCTTATATGATTGTCAATACAAGTCTTTTTTCTCAGCATTTGCTGGCCTGACAGAGCAAATTAAGTTGGACCGCTATCTGCATCCACACTTCCGATACTACATGAGGGAGGTCAGAACAGTTGTTTACTCCCAATTTTTGGAATCTTATAAGAGTGTGACAATTGAAGCCATGGCAAAAGCCTTTGGAGTGACAGTGGATTTCATTGATCTGGAGCTATCACGTTTTATTGCAGCAGGGAAACTTCATTGTAAGATTGATAAAGTTGCAGGTGTTCTTGAAACTAACCGCCCTGATGCCAAGAATGCTCTTTACCAAGCAACTATTAAGCAAGGGGACTTCCTATTGAACCGGATCCAGAAATTGTCACGTGTGATAGATCTTTAG 624 0.3942 MKALYCMSTRNFKKAAKLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01507 207 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 108 191 IPR000717 -
Pumo4g01507 207 Pfam PCI domain 75 175 IPR000717 -
Pumo4g01507 207 Pfam 26S proteasome subunit RPN7 2 57 IPR045135 -
Pumo4g01507 207 ProSiteProfiles PCI domain profile. 11 179 IPR000717 -
Pumo4g01507 207 SUPERFAMILY "Winged helix" DNA-binding domain 103 184 IPR036390 -
Pumo4g01507 207 Gene3D - 1 158 - -
Pumo4g01507 207 PANTHER 26S PROTESOME SUBUNIT 6 2 207 IPR019585 -
Pumo4g01507 207 FunFam 26S proteasome regulatory subunit N7 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01507 Pumo-Chr4 19003319 19004389 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01507 K03037 - gmx:100810692 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01507 4 19003319 19004389 Pumo4g01507 4 19003319 19004389 ECH