Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01489 ATGAACCATTCCACAAAACATCACTGGCACTGCGTTACTTCCCTCAAAACCCTAACACCCCACATCACCTGCCTGGCGGTCCACCGTAACCTCCTCTACGCCGCATCCCTCAACCTCATCAACGTCTTCGACATCTCCCATTACTCCCACATCGACGCCTTCAACCAAAGCCCCGCCTCAGGCTTCGTCAAGTCCATCACCTTCACCAATTCAAGAGTCTTCACCGCTCACCAAGACCGCAAGATTCGCGTCTGGCTCATTACCCCCTCCAAACGACACCGTCTCCTCTCCTCCCTCCCCACCGTAACCGACCGTCTGCGCCGCTGCATAATACCCCGAAACTACGTCAGCGTTCGACGCCACAAGACCAGGCTCTGGATCCAGCATTGCGACACCGTGTCCGGTTTAGCGGTTTACGAGAGGTTTATGTATTCGGTTTCGTGGGACAGGAGCTTTAAGGTTTGGGACCTGTTCAGTTACCGCTGTTTGGAGTCCGTTAAGGCGCATGAGGACGCCATCAACGCTGTTTCTGTTAACGGTGACGGCACCGTTTACACGGCATCCGCGGATGGGAGCATCAAGGTTTGGAGGAGGGATGGCGAGGCGAAACGGCACGCGCTCGTGAGCACCATAGGGAGGCAGAAGTCAACGGTCAATGCGCTTGCGTTGGACGGCGGTGGCGAGGCCTTGTTTTCCGGCGGTGGCGACGGCGAGATCTGCCGGTGGGAGTGGGGGTGTGAGGAAAACGGCGGCGTGAAGATGGAGACTTTGCGGGGCCATGGTGGGGCCATACTGTGTCTGATCCACGTGGCGGGTTTGTTGGCGAGTGCGTCAGCAGATCTAACGGTTAGGATTTGGCAAAAGGAAAGAGGGAGTAGTGGGTATTGTTGCAGGGCAGTGTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTGGCACTTCCGGGCGGTGAAGCTGACTCAAACGGCGTCGTTACACTCTTCAGTGGAAGCCTTGACGGGGAGATTAAGGTGTGGGAGGTGTTTGGTTTGGTTTGA 1038 0.5665 MNHSTKHHWHCVTSLKTLTPHITCLAVHRNLLYAASLNLINVFDISHYSHIDAFNQSPASGFVKSITFTNSRVFTAHQDRKIRVWLITPSKRHRLLSSLPTVTDRLRRCIIPRNYVSVRRHKTRLWIQHCDTVSGLAVYERFMYSVSWDRSFKVWDLFSYRCLESVKAHEDAINAVSVNGDGTVYTASADGSIKVWRRDGEAKRHALVSTIGRQKSTVNALALDGGGEALFSGGGDGEICRWEWGCEENGGVKMETLRGHGGAILCLIHVAGLLASASADLTVRIWQKERGSSGYCCRAVLEGHEKPVKSLVALPGGEADSNGVVTLFSGSLDGEIKVWEVFGLV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01489 345 SMART WD40_4 204 243 IPR001680 GO:0005515
Pumo4g01489 345 SMART WD40_4 250 287 IPR001680 GO:0005515
Pumo4g01489 345 SMART WD40_4 119 156 IPR001680 GO:0005515
Pumo4g01489 345 SMART WD40_4 159 197 IPR001680 GO:0005515
Pumo4g01489 345 SMART WD40_4 47 86 IPR001680 GO:0005515
Pumo4g01489 345 SMART WD40_4 8 44 IPR001680 GO:0005515
Pumo4g01489 345 SMART WD40_4 294 340 IPR001680 GO:0005515
Pumo4g01489 345 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 341 IPR045182 -
Pumo4g01489 345 Pfam WD domain, G-beta repeat 161 196 IPR001680 GO:0005515
Pumo4g01489 345 Pfam WD domain, G-beta repeat 297 339 IPR001680 GO:0005515
Pumo4g01489 345 Pfam WD domain, G-beta repeat 254 286 IPR001680 GO:0005515
Pumo4g01489 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 196 - -
Pumo4g01489 345 FunFam BnaA09g28200D protein 116 201 - -
Pumo4g01489 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 196 IPR001680 GO:0005515
Pumo4g01489 345 ProSitePatterns Trp-Asp (WD) repeats signature. 327 341 IPR019775 -
Pumo4g01489 345 Gene3D - 4 111 IPR015943 GO:0005515
Pumo4g01489 345 Gene3D - 113 343 IPR015943 GO:0005515
Pumo4g01489 345 SUPERFAMILY WD40 repeat-like 8 341 IPR036322 GO:0005515
Pumo4g01489 345 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Pumo4g01489 345 PRINTS G protein beta WD-40 repeat signature 327 341 IPR020472 -
Pumo4g01489 345 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01489 Pumo-Chr4 18813622 18814659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01489 69 340 Acyl Lipid Metabolism Gene Families AT3G18860 25.623 1.09e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01489 - - gmx:100811392 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01489 4 18813622 18814659 Pumo4g01489 4 18813622 18814659 ECH