Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01458 ATGGACTCTGCTCTAGTGATCAAGGTGAAATATGGAGATACCCTCAGGCGCTTCAGTGCTCGTGTGGATGAGAATAATCGACTGGATCTTGACATGGTTGGGTTGAGAGCCAAGATATGTTCTATCTTCAGTTTCAGTGCTGATGCAAATTTAATTCTGAGATATGTTGATGAAGATGGTGACTTGGTGACTCTAGTTGATGATGATGATTTGCATGATGTGATGAGGCAGCAATTGAAGTTCTTGAGAATTGATGTACATATGAACAATGACGGTGGTGGTAAATCAAATGCTGGGTCAAGTGGAAGTGCCACCCCCTTAGAATCTTGTCCTGTCACAAGCCCATTTCTGTTTAGAAATGCTATGTTACACGAACATCTTTCTAAAAAACCAGCATCTTCAAGTCCTGTGGTTGATAATCTTGCCGATTCAATTTTGAAAATGGGACTAAATTCTCATTTCCAGCCTCGTGATGCAGCTGGTAAAAGTTCAAAAACTGGTGTTCCTGAAGAACCTATCACTAAAGCAATAGGTCCACAATCTTCACATGTGGACTCAGCCTCCAATGGCAGTGTCAATAGTGATAGTGCCACCCCCTTAAGATCTCCAGTTCCAAACCCATCTCAGAGTGGAAATGCTGTTAAAGTTGACGTCTCATGTTCTGTGCCTGTGCCAGTACGCCAGTTTCTTTCCAATTTATCACGTTCAAATGCTGCATCTTCAAGTCAGCTGCCTGCAAATTTCACTGAATTAATTTCCCTAGTGCCTGAGCCAGTACGCCAGTTTCTTTCTAATTTATCACGTTCAAATGCTGCATCTTCAAGTCAGCCGCCTGTTAATCTAAATGATTTAATTTCCCTACTGGGTCAATCTGTTCTAAATTCTTATTGCCAGCCTCATGTGACAACTGGTCCATTCTCAAAAAATGGTGTTCCTGAAGAACCTATCACTCCTGAAGCAAGAGGTCAACAGATTCCATCTGCAGACTCGGCTTCCAATGCCACTCAACAGGTGGAGGCTGGAAACGTTGCCTCTGCTTCCAATGCCAGTCAACAGGTGGAGGCAGGAGTGGCCGCTGTTGATCTCAATATCCCTCCTTTTGATCCCTTTTTAGCTCAGTTCACATATGAAAATAAGGCTCCACTTTCATCAGAAGTCCCTAATGGTGATGGCAAGACGGGTAAAATGTCAACTGTTCATAGTTCTGCTGGTAAGGGTGACAGTAGTGGGACATCCTCAAGTTCTGCTGTTTCTAATAACAGTTCAACCCAGACTACATCATTGACTTCTGGGGCTTTCATTGACTGTCCATTTTCTGGGACATATATTAATTCTTGGACACCACCACTTGGAAACCCTCAAATGCCCCCATTTAAAAGGAGCCATAGTCACACTGACGCAATGACTGGTATGTTCCATAAGGGGGTCCGCTGTGATGGCTGTGGTGTCTATCCAATAACTGGACCTCGTTTCAAATCCAAAGTAAAGGAAAATTATGATCTTTGCAACATTTGTTTCAATGAAATGGGTAATGGGACAGATTATATCAGAATGGACCGCCCTGCATCTGCTCGTGCCCCTCGATACGTATATGGACATACAAAAAACTTTCCAACATTACCACCACATATTTTTAAGAAAGGTGCCATTTTGAAGCATGCAAGGCCAAAGCTAGATAGTCGATTCATTTTGGATGTCAATGTGTTAGATGGTACAATGATGGCTCCATCTACTGCATTTACGAAGATCTGGCGGATGCGCAATAATGGCACTATAGTCTGGCCCAAGGGAACTCAACTTTTTTGGATTGGAGGAGACAAGTTTAGTGACTCTCATTCAGTTGACTTAGAGGTTTCCGAGGATGGTGTCCCTGTGGAGAAGGAACTTGACATTGCAGTTGACTTTACAGCACCTCAGTTACCTGGTCGATACATATCATACTGGAGGATGGCAACTCCATCTGGACATAAATTTGGCCAACGTGTTTGGGTCCTTATACAGGTTGATGCCTCTCTCAAGGACTCATTTTATGATAACTCTCAAGGTCTGAACTTGAATATTCCCCTTGATATCAGTGGCGCTAAAGGACCTCAGATTATAGATATCAATGTCCAGCCTACTGAGGATGATACTTTTCTTCAAACCCACAATCCTAATGCTCCCACTGAACCTGTGAATCAAATGGTTGATAAGGAACCAAGGTTGGAGCTGGAAAACGAATTCCCTATAAATGAAGCTACATTTGTTGCCACTGTTGCCTCAGCTCCTGCTGCAACCTCTGTGGCATCTTCATCAGTTTCTTATCCTATTATTGATTTATCTGAAACAACCCCAGCTGTTCCCTCTAATCAGCAACCCTCAACCGTGGATGTGCCATCATCATCTATGGGGACTGATGGAATTAATTCTGTGGAGGAGAGTCTACTTAAAGAGCTTGAGGAGATGGGTTTTAAGCAGGTTGATTTGAACAAGGAGATCTTGAGGAAGAATGAGTACGATCTGGAGCAATCCCTAGACGCCCTCTGTGGTGTTGATGTCTGTGGTGTTTCTGAGTGGGACCATATGCTTGAAGAGTTACAGGAGATGGGTTTCCGTGACAAAGAGGTGAATAAGAGGCTGCTTAAGAAAAACAATGGAAGCCTCAAACGTGTTGTTATGGATTTAATCAACGGCGATGAAAGGGCAAAGTATATTCAGTCCAGAGTCTCTAATAATTTGGGTTGTGACAGTAGTGTGAAGTTTGGGACACCTAAAAGGGACTTGTCACTTCTCTTTGACACCCAACCGTGTGTTGGTTCTTGCTACAAGCACCAAAATCATGCAAGACATGTGACAGCGGTTGAGACCAATAATGCCAGCGCTAAGGCCGAAATCGCCCTTGATGATTTTGCCACTGCCGAAGTAAAAGTCCTCAATGATGTGGGTAGGGGAGAGGGTGAGGCGATCCCTGTTTCAAGAAGCTGCTGGATGACGATTTCTAGACACACTTGA 2991 0.4356 MDSALVIKVKYGDTLRRFSARVDENNRLDLDMVGLRAKICSIFSFSADANLILRYVDEDGDLVTLVDDDDLHDVMRQQLKFLRIDVHMNNDGGGKSNAGSSGSATPLESCPVTSPFLFRNAMLHEHLSKKPASSSPVVDNLADSILKMGLNSHFQPRDAAGKSSKTGVPEEPITKAIGPQSSHVDSASNGSVNSDSATPLRSPVPNPSQSGNAVKVDVSCSVPVPVRQFLSNLSRSNAASSSQLPANFTELISLVPEPVRQFLSNLSRSNAASSSQPPVNLNDLISLLGQSVLNSYCQPHVTTGPFSKNGVPEEPITPEARGQQIPSADSASNATQQVEAGNVASASNASQQVEAGVAAVDLNIPPFDPFLAQFTYENKAPLSSEVPNGDGKTGKMSTVHSSAGKGDSSGTSSSSAVSNNSSTQTTSLTSGAFIDCPFSGTYINSWTPPLGNPQMPPFKRSHSHTDAMTGMFHKGVRCDGCGVYPITGPRFKSKVKENYDLCNICFNEMGNGTDYIRMDRPASARAPRYVYGHTKNFPTLPPHIFKKGAILKHARPKLDSRFILDVNVLDGTMMAPSTAFTKIWRMRNNGTIVWPKGTQLFWIGGDKFSDSHSVDLEVSEDGVPVEKELDIAVDFTAPQLPGRYISYWRMATPSGHKFGQRVWVLIQVDASLKDSFYDNSQGLNLNIPLDISGAKGPQIIDINVQPTEDDTFLQTHNPNAPTEPVNQMVDKEPRLELENEFPINEATFVATVASAPAATSVASSSVSYPIIDLSETTPAVPSNQQPSTVDVPSSSMGTDGINSVEESLLKELEEMGFKQVDLNKEILRKNEYDLEQSLDALCGVDVCGVSEWDHMLEELQEMGFRDKEVNKRLLKKNNGSLKRVVMDLINGDERAKYIQSRVSNNLGCDSSVKFGTPKRDLSLLFDTQPCVGSCYKHQNHARHVTAVETNNASAKAEIALDDFATAEVKVLNDVGRGEGEAIPVSRSCWMTISRHT 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01458 996 MobiDBLite consensus disorder prediction 302 345 - -
Pumo4g01458 996 SMART PB1_new 4 89 IPR000270 GO:0005515
Pumo4g01458 996 SUPERFAMILY RING/U-box 467 523 - -
Pumo4g01458 996 MobiDBLite consensus disorder prediction 390 427 - -
Pumo4g01458 996 Gene3D - 849 892 - -
Pumo4g01458 996 MobiDBLite consensus disorder prediction 179 212 - -
Pumo4g01458 996 Gene3D - 465 525 IPR043145 -
Pumo4g01458 996 MobiDBLite consensus disorder prediction 776 798 - -
Pumo4g01458 996 Gene3D - 797 846 - -
Pumo4g01458 996 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 803 841 IPR015940 -
Pumo4g01458 996 Pfam Zinc finger, ZZ type 473 508 IPR000433 GO:0008270
Pumo4g01458 996 FunFam protein NBR1 homolog 851 893 - -
Pumo4g01458 996 ProSiteProfiles Zinc finger ZZ-type profile. 473 523 IPR000433 GO:0008270
Pumo4g01458 996 Pfam PB1 domain 6 84 IPR000270 GO:0005515
Pumo4g01458 996 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 3 890 - -
Pumo4g01458 996 MobiDBLite consensus disorder prediction 382 427 - -
Pumo4g01458 996 SUPERFAMILY UBA-like 852 890 IPR009060 GO:0005515
Pumo4g01458 996 SUPERFAMILY CAD & PB1 domains 3 80 - -
Pumo4g01458 996 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 850 891 IPR015940 -
Pumo4g01458 996 MobiDBLite consensus disorder prediction 153 212 - -
Pumo4g01458 996 Pfam Ig-like domain from next to BRCA1 gene 567 668 IPR032350 -
Pumo4g01458 996 FunFam next to BRCA1 gene 1 protein-like 553 673 - -
Pumo4g01458 996 Gene3D - 1 88 - -
Pumo4g01458 996 CDD NBR1_like 556 669 IPR032350 -
Pumo4g01458 996 MobiDBLite consensus disorder prediction 323 345 - -
Pumo4g01458 996 CDD UBA_NBR1 851 889 - -
Pumo4g01458 996 Gene3D Immunoglobulins 553 672 IPR013783 -
Pumo4g01458 996 ProSiteProfiles PB1 domain profile. 4 86 IPR000270 GO:0005515
Pumo4g01458 996 SMART zz_5 472 517 IPR000433 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01458 K17987 - gmx:100778692 1446.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01458 4 18494230 18504132 Pumo4g01458 4 18494230 18504132 ECH