Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01430 ATGAAACTCATACCTGTCAGACATTCTGCAATGGGTTCCATTTGGATGTGCCATTTCTTTCTGTTATTGTCCATACTTGGTACTACTTTTATTGCAACTATGGCCAATAATGCAACAGATTCCTACTGGCTTCTCAGAATTAAATCAGAACTGGTAGATCCATTAGAGGCCCTTAGCAACTGGTCTCCAACAACTCATACATGCAACTGGAATGGAATAACGTGTGCAGTTGATCAGGAACATGTTATAGGCCTGAATCTGTCTGGTTCAGGAATATCAGGTTCCATTTCAGCTGAGTTCAGTCACTTCACTTCTCTTGAAACACTTGATCTGTCTTCAAATTCTCTTTCTGGCTCCATCCCTTCAGAGCTGGGTCAGCTTCAAAACCTAAGAATATTGCAACTATACTCAAATGATCTCTCTGGGAACATTCCTGCAGAGATAGGTAACTTGAGGAAGTTGCAAGTTCTTAGAATAGGAGACAACATGTTGACAGGTGAAATTCCACCTAGTGTTGCCAATATGAGTGAATTGACAGTGTTGGCTCTAGGCTATTGCCACTTGAATGGAAGCATACCCTTTGGAATTGGTAAATTGAAGCATCTAATATCACTTGATTTGCAGATGAACAGCCTTAGTGGCCCCATACCTGAAGAAATTCAAGGCTGTGAAGAGCTCCAAAATTTTGCAGCATCAAACAACATCCTTGAAGGAGACATACCTTCCTCTATGGGGTCTCTTAAATCTTTGAAAATTCTGAATCTGGCCAATAACAGTTTATCTGGATCAATTCCTACAGCTTTGAGCCATCTTTCTAACTTGACATACCTGAATTTGCTTGGAAACAAACTACATGGAGAAATTCCTTCTGAGCTTAAAAGTCTGATTCAGCTGCAGAAGCTAGACTTGTCCCAAAACAACCTCTCTGGATCAATACCTCTCCTTAATGTAAAATTGCAAAGTCTTGAAACTCTTGTTTTGTCTGATAATGCTCTGACAGGTAGCATTCCAAGTAACTTCTGCCTCACAGGTTCAAAGCTTCAGCAACTTTTCTTGGCTAGAAACATGCTCTCTGGCAAGTTTCCCTTGGAGTTGCTCAACTGCTCCTCAATCCAACAGTTGGACCTTTCTGATAACAGCTTTGAAGGAGAACTTCCTTCCAGCTTGGACAAACTGCAGAACCTCACAGATCTTGTGCTCAACAACAACAGCTTTGTTGGATCTCTACCTCCTGAAATTGGGAACATTAGTAGCTTGGAAGATCTTTTCCTATTTGGTAACTTCTTAACAGGTAAAATTCCATTGGAGATTGGAAGGCTGCAGAGATTGAGCACCATTTACCTCTATGACAACCAGATGTCTGGACCTATACCAAGGGAGTTAACAAACTGCACAAGCTTAAAGGAAATTGACTTCTTTGGAAATCACTTCACAGGGCCAATTCCAGAAACTATAGGTAAGCTCAAGGATTTGGTTGTTCTTCATCTTAGGCAGAATGACTTGTCTGGTCCAATCCCACCAAGCATGGGGTACTGTAAAAGCCTTCAGATATTGGCCTTAGCAGATAACATGTTGTCTGGTTCCATTCCACCCACATTCAGTTACCTTTCAGAACTCACTAAAATTACCCTTTACAATAACTCCTTTGAAGGACCTGTCCCTCATTCACTCTCTTCTCTCAAAAGCCTCAAAATCATAAACTTTTCACACAACAAGTTCAGTGGAAGTTTCTTCCCTCTCACTGGTTCAAATTCTCTGACCATTCTGGACCTGACTAACAACAGCTTCTCAGGTCCCATCCCTTCCACTCTAGCCAATTCTAGAAACCTCAGCCGTCTCAGACTTGGACAAAATTATCTCACAGGAAGCATTCCTTCTGAATTTGGCCACCTCACTGAGCTCAACTTTCTTGATCTATCATTCAACAATTTAACAGGAGAAGTGCCACCTCAACTCTCAAATTCCAAGAAAATGGAACACATCCTGATGAGTAACAACAGCTTAAGTGGCAAAATACCTGATTGGTTGGGAAGCTTACAAGAACTTGGTGAGCTAGATCTCTCTTACAACAACTTCACTGGGAGGGTACCTTCTGAGCTTGGTAACTGCTCAAAACTACTCAAGCTTTCTCTCCATCACAACAATCTCTCTGGTGAAATCCCTCAAGAGATTGGAAACCTCACTTCCCTCAATGTCCTCAATTTGCAAAGGAACAGCTTCTCCGGCCTCATTCCTCCAACAATTCAGCAATGCACAAAGCTGTATGAGCTCAGGCTCTCAGAAAACTTGTTAACAGGCACCATACCTGTTGAGCTAGGAGGGCTAGCTGAGTTGCAAGTGATATTGGACTTGAGTAAAAATCTCTTCACTGGTGAGATTCCACCATCTCTAGGAAACCTCATGAAGCTAGAGAGACTCAACCTTTCTTTCAACCAACTTGAAGGAAAAGTTCCTCCTTCACTTGGCAAACTCACAAGCCTGCACGTGCTGAATCTCTCAAACGACCACCTTGAAGGCCAGATTCCTTCAACATTTTCAGGATTCCCACTAAGCTCATTCCTGAAGAATAACGGCTTGTGTGGCCCACCATTGGGATCGTGCTCAGAATCCACGGCACAGGGGAAAATGCAGCTATCAAACACACAAGTGGCAGTAATCATTGTGGCCATTGTCTTTACTTCCACAGTGATATGCTTAGTGATGTTGTATATCATGCTCAGGATCTGGTGCAACTGGAGAAAAGTGGCCATTTCAAGTGCAGAGGGTGGCACTGTTGCTCGCAAGACAAGGAATGGAGAGTATTGGAATATGAATTCCTTTGGGTTCATTCCTTCACCAGATAAGCAGAATTCAGCAACAACTTCTTTCTATAAAATGGAAACCATGGAAAATACAAATATGTAA 2904 0.4215 MKLIPVRHSAMGSIWMCHFFLLLSILGTTFIATMANNATDSYWLLRIKSELVDPLEALSNWSPTTHTCNWNGITCAVDQEHVIGLNLSGSGISGSISAEFSHFTSLETLDLSSNSLSGSIPSELGQLQNLRILQLYSNDLSGNIPAEIGNLRKLQVLRIGDNMLTGEIPPSVANMSELTVLALGYCHLNGSIPFGIGKLKHLISLDLQMNSLSGPIPEEIQGCEELQNFAASNNILEGDIPSSMGSLKSLKILNLANNSLSGSIPTALSHLSNLTYLNLLGNKLHGEIPSELKSLIQLQKLDLSQNNLSGSIPLLNVKLQSLETLVLSDNALTGSIPSNFCLTGSKLQQLFLARNMLSGKFPLELLNCSSIQQLDLSDNSFEGELPSSLDKLQNLTDLVLNNNSFVGSLPPEIGNISSLEDLFLFGNFLTGKIPLEIGRLQRLSTIYLYDNQMSGPIPRELTNCTSLKEIDFFGNHFTGPIPETIGKLKDLVVLHLRQNDLSGPIPPSMGYCKSLQILALADNMLSGSIPPTFSYLSELTKITLYNNSFEGPVPHSLSSLKSLKIINFSHNKFSGSFFPLTGSNSLTILDLTNNSFSGPIPSTLANSRNLSRLRLGQNYLTGSIPSEFGHLTELNFLDLSFNNLTGEVPPQLSNSKKMEHILMSNNSLSGKIPDWLGSLQELGELDLSYNNFTGRVPSELGNCSKLLKLSLHHNNLSGEIPQEIGNLTSLNVLNLQRNSFSGLIPPTIQQCTKLYELRLSENLLTGTIPVELGGLAELQVILDLSKNLFTGEIPPSLGNLMKLERLNLSFNQLEGKVPPSLGKLTSLHVLNLSNDHLEGQIPSTFSGFPLSSFLKNNGLCGPPLGSCSESTAQGKMQLSNTQVAVIIVAIVFTSTVICLVMLYIMLRIWCNWRKVAISSAEGGTVARKTRNGEYWNMNSFGFIPSPDKQNSATTSFYKMETMENTNM 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01430 967 Pfam Leucine rich repeat 232 284 IPR001611 GO:0005515
Pumo4g01430 967 Pfam Leucine rich repeat 585 644 IPR001611 GO:0005515
Pumo4g01430 967 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 37 193 - -
Pumo4g01430 967 ProSiteProfiles Leucine-rich repeat profile. 105 127 IPR001611 GO:0005515
Pumo4g01430 967 SUPERFAMILY L domain-like 580 843 - -
Pumo4g01430 967 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 289 385 - -
Pumo4g01430 967 Gene3D Ribonuclease Inhibitor 315 534 IPR032675 -
Pumo4g01430 967 Gene3D Ribonuclease Inhibitor 535 871 IPR032675 -
Pumo4g01430 967 ProSiteProfiles Leucine-rich repeat profile. 297 319 IPR001611 GO:0005515
Pumo4g01430 967 SMART LRR_typ_2 151 175 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 295 318 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 392 416 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 103 127 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 199 222 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 488 512 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 319 342 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 679 703 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 800 824 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 631 655 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 247 270 IPR003591 -
Pumo4g01430 967 SMART LRR_typ_2 727 750 IPR003591 -
Pumo4g01430 967 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 482 578 - -
Pumo4g01430 967 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 579 871 - -
Pumo4g01430 967 PANTHER UNNAMED PRODUCT 18 532 - -
Pumo4g01430 967 FunFam Uncharacterized protein 194 288 - -
Pumo4g01430 967 FunFam Uncharacterized protein 386 481 - -
Pumo4g01430 967 Gene3D Ribonuclease Inhibitor 196 314 IPR032675 -
Pumo4g01430 967 Gene3D Ribonuclease Inhibitor 37 195 IPR032675 -
Pumo4g01430 967 PRINTS Leucine-rich repeat signature 106 119 - -
Pumo4g01430 967 PRINTS Leucine-rich repeat signature 295 308 - -
Pumo4g01430 967 SUPERFAMILY L domain-like 344 646 - -
Pumo4g01430 967 Pfam Leucine rich repeat N-terminal domain 39 75 IPR013210 -
Pumo4g01430 967 Pfam Leucine Rich Repeat 802 824 IPR001611 GO:0005515
Pumo4g01430 967 Pfam Leucine Rich Repeat 105 125 IPR001611 GO:0005515
Pumo4g01430 967 SUPERFAMILY RNI-like 85 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01430 Pumo-Chr4 18113104 18116281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01430 175 889 Receptor kinase-like Gene Family AT5G46330 32.944 3.14e-107 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01430 - - gmx:100818792 1761.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01430 4 18113104 18116281 Pumo4g01430 4 18113104 18116281 ECH