Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01387 ATGGGGACGACAACGACACCCGTTTCCCACACGGTTCGCGTGTTCAACATTCCCCAATCGGCCACCGCGAAGGACCTCCTCGGCTTCCTCGAATCGACGGTGGGTCCCTCGACGGTGTTCGCCCTCGAAATCTTCTCCGACAACCCCAACTGGAAGTCCCGGGGCGCCGGCCGCGTCCAGTTCGAGACCCTCGACGCCAAGTCCCGCGCCCTTTCCCTCTCCCAACTCAACCAACTCCTCTTCCGCCGCCACTTCCTCCGCCTCTCCGAAACCCACGACGACATCATCTTCCGCCCCCACCACCGCCTCCAAAACGGCGTCCTCTACGCCGGCTTCATGCTCGCCGACCACCGCATGAGCGTCCTCGACTCCTGGGAGGGCGTCGCGGGGTGGGTCATGCCCCAAAGGAAGAGGCTTGACTTCTGGGTCTGGCATAACGGCGACTGTTACAGACTCGAGATTTTCTTTGAGGACATTTTGGAGTCTCATGGCTATTGTTTGGGAGAAGGTGCCACACTCAATGCCCTCCTCTTGAAGCTGAAATTTGGGCCAAGGATCTATAAGAGAAAAGTGGGGCCAGATGTGGCAGCCAAGTTTAGGGGTGATAGGTACCGTTTTTGTAAGGAGGATTTTGAGTTTCTTTGGGTGCGGACTACTGACTTCTCGCCTCTCAAGTCAATTGGGCACTCTACTTCGTTTTGTTGGGAAATTGTAGAAGAACATTTAGCTTCGGATGTTTTTACAAGTTTCCCACTCTACAAGGAAAATTTGAGAGATCTGGCTCTGGAAGACGGCGAAGAATTCTGTTCTTCGACAGAAGCAGTTCCGATTGTAAAGTGTGCTTCGCAATCCAAGTTACCTTATGAGGCTCTTTTCCAGCTGAATTCTCTTGTTCATACCCAGAAAATTAGTCTTGCTTCGGTGGATGATGAATTGATTGACTTGTTAGCAGGCTTAGATGACGAAAGTAGAGCTGTGATTTTTCAGAAATTGCACAAGATGAGCTTCACTTGTTACGAGCCTCTCAAATTTGTCAAGATTCAATTGCATGTGCTGAGTAACAAGAAAAGAAGTCTGCCGCAATCGTCGCAGAAAAGGTTGACAGATAATAACGTTATGAGCTGTCATAGAGCCTTGATTACCCCGACAAAGATTTATTGCCTCGGTCCTGAGCTTGAAACCTCAAATCACGTGGTAAAGCACTTTGCTCCATATGCATCAGACTTCATGAGGATTACCTTTGTTGAAGAGAATTGGAATAAGCTTCCAACTAATGCAGTATCAACTGGTGTGCAAAAGGGAATCTTTTCAAAGCCTTTGAAAACTGAAATATATAAGCGGATATTGACTATTCTTCGAGATGGGATTGTAATTGGCTCAAAGAGATTTGAGTTCCTGGCCTTCTCTGCTAGTCAGCTGCGATCAAATTCTGTTTGGTTATTTGCTTCTAATGACAATCTGAAAGCAGCAGATATCAGAGAATGGATGGGATCCTTCATCAATATTCGCAGTGTTTCTAAATGTGCAGCGAGGATGGGTCAGTTGTTCAGTTCTTCCATGCAAACTTTTGAAGTGCACTCTCAAGATGTGGAGATAATTCCAGATATTGAAGTTACTTCTGATGGTGTAAGCTACTGTTTCTCAGATGGTATTGGAAAAATTTCCCAATCTTTTGCTAGGCAAGTTGCTCAAAAGCTAAAATTGGATCATAGTCCATCAGCATTTCAAATTCGGTATGGAGGATATAAAGGTGTCATTGCTGTTGATCGCCATTCCTTTAGAAAGTTATCATTGCGTAGCAGCATGCTTAAATTTGAATCCAAAAACAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGTTGTCTACGTTAGGAATAAAAGATGAGGTGTTTTTGGCAATGCAACAGGACCAATTGGATTTGTTAGGAAGGATGTTGACTGATAGTAAAGCGGCTTTGGATGTTTTGGAAAGTTTAAGCGGAGCTGATTCAAAGAGCATTCTAGTGAAGATGTTGCATGAATTTAATGAGCCAAACAGTGAGCCTTACCTATCAATGATGCTTAAGGCTTATTATGCATACCAATTATCTGACTTGAAAAGTAGATGCCGAATATTTGTTCCCAAGGGTCGAGTCTTAGTAGGTTGCTTGGATGAAACTGGTCTTTTGAATTATGGCCAAGTATTTGTTCGCATAACCGTGACAAAAACTATGGAAAAAATTGGAGATGAAAACTTAAGGAAAGTGGACGGCGATGATAGCACACGCATAATAGTGGGAAAGGTGGTGGTCACAAAAAATCCTTGTCTTCACCCAGGAGACGTCAGAGTCCTTGATGCTATCTACAATGAAGAATTAGAGGAAAAGGGTTTGAGGGATTGCCTTGTATTTCCACTAAAAGGACATAGGCCTCATCCAAATGAATGCTCTGGAGGTGATCTTGATGGAGATTTGTTTTTCATAAGCTGGGACAAAGATCTAATTCCATGTCAAACTGAGGCTCCAATGGACTACACAGGAAGGAGGCCGCGTATAATGGACCATAAGGTGACCCTAGAGGAAATCCAACAATTCTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCTACCGCACATCTAGTTCACGCTGACCGTGAGCAAGATAAGGCCAAGAGTAGAAAATGTCTGGAGTTGGCACAGCTTCATTCCATGGCTGTTGACTTTGCAAAGACCGGAGCACCTGCTGCAATGCCTAGAGTTCTGAAACCCAGAGAGTTTCCAGATTTCATGGAGAGGGTTGACAAGCCTATGTACATCTCCAAGGGGGTACTGGGAAAACTTTATCGCGCCATAATTGAGTCACAATTGCAAATAAGATATAGCTTTGTGTGGTCAGAGAAGCATGCTGAAGAAGCATATGATCCTAGCCTTGAAGTGAATGGTTATGAGGCCTTCCTTGAGACAGCCTCAAGTCACAAAGAAATGTATGCACAGAAGATGAGCAGTTTGATGAACTTCTACGGTGCAGAGACCGAGGATGAAATGATACTCGGTAACTTGCAAAACCGTGCTTCATATTTGCAGCGCGATAACAGGAGATATGGTGACATGAAGGATCGGATTCTGCTCTCAGTGAAGAATCTTCAGCGTGAAGCTAAAGAATGGTTTGAAACCAGTTGCCAACCGCGTGAATATAAGCCTATGGCATCTGCATGGTATCATGTGACCTATCACCCCAGCTATTACTGCCGGGAAAGCCCATGTTTTCTAAGCTTTCCATGGATAGTTGGTGACATTTTATTGCAAATAAAGTCTGTAAACAAAGGAGTTCACAGATGA 3363 0.446 MGTTTTPVSHTVRVFNIPQSATAKDLLGFLESTVGPSTVFALEIFSDNPNWKSRGAGRVQFETLDAKSRALSLSQLNQLLFRRHFLRLSETHDDIIFRPHHRLQNGVLYAGFMLADHRMSVLDSWEGVAGWVMPQRKRLDFWVWHNGDCYRLEIFFEDILESHGYCLGEGATLNALLLKLKFGPRIYKRKVGPDVAAKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVFTSFPLYKENLRDLALEDGEEFCSSTEAVPIVKCASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLLAGLDDESRAVIFQKLHKMSFTCYEPLKFVKIQLHVLSNKKRSLPQSSQKRLTDNNVMSCHRALITPTKIYCLGPELETSNHVVKHFAPYASDFMRITFVEENWNKLPTNAVSTGVQKGIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGSFINIRSVSKCAARMGQLFSSSMQTFEVHSQDVEIIPDIEVTSDGVSYCFSDGIGKISQSFARQVAQKLKLDHSPSAFQIRYGGYKGVIAVDRHSFRKLSLRSSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEVFLAMQQDQLDLLGRMLTDSKAALDVLESLSGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLDETGLLNYGQVFVRITVTKTMEKIGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPGDVRVLDAIYNEELEEKGLRDCLVFPLKGHRPHPNECSGGDLDGDLFFISWDKDLIPCQTEAPMDYTGRRPRIMDHKVTLEEIQQFFVDYMINDTLGAISTAHLVHADREQDKAKSRKCLELAQLHSMAVDFAKTGAPAAMPRVLKPREFPDFMERVDKPMYISKGVLGKLYRAIIESQLQIRYSFVWSEKHAEEAYDPSLEVNGYEAFLETASSHKEMYAQKMSSLMNFYGAETEDEMILGNLQNRASYLQRDNRRYGDMKDRILLSVKNLQREAKEWFETSCQPREYKPMASAWYHVTYHPSYYCRESPCFLSFPWIVGDILLQIKSVNKGVHR 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01387 1120 Pfam RNA dependent RNA polymerase 380 959 IPR007855 GO:0003968
Pumo4g01387 1120 Gene3D - 3 95 IPR012677 -
Pumo4g01387 1120 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 93 IPR000504 GO:0003723
Pumo4g01387 1120 PANTHER RNA-DEPENDENT RNA POLYMERASE 9 1112 IPR007855 GO:0003968
Pumo4g01387 1120 SUPERFAMILY RNA-binding domain, RBD 6 94 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01387 Pumo-Chr4 17600319 17605975 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01387 K11699 - gmx:100808274 2113.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01387 4 17600319 17605975 Pumo4g01387 4 17600319 17605975 ECH