Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01380 ATGGCTGCAACAGCTTCAAGGTTCATCAAGTGTGTGACAGTTGGGGATGGAGCTGTAGGCAAAACTTGCATGCTCATTTGCTATACAAGCAACAAATTCCCCACGGACTATATTCCAACGGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCACAACTGTCAATTTAGGCCTCTGGGACACTGCTGGGCAAGAGGATTACAACAGGTTGAGGCCTTTGAGCTATAGGGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTTAGTCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCTGGCGTCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTCCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGTCTGGTTCCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTGGTAGGAGCTACTTATTATATAGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGTCAGTTTTTGATGCTGCTATCAAGGTGGTCATCAAGCCTCCACAAAAACAAGAGAAGAAGAAAAAACCACGTCGAGGGTGTCTACTGTCAGTACACTATTTTCATATCATATCTCCTGCACGTGAAACTTTCTTACTTGTGAAAAGAGATAGATCATTAGTCATGACACTGACCTAA 684 0.4415 MAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIKPPQKQEKKKKPRRGCLLSVHYFHIISPARETFLLVKRDRSLVMTLT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01380 227 ProSiteProfiles small GTPase Rab1 family profile. 4 217 - -
Pumo4g01380 227 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Pumo4g01380 227 CDD Rop_like 8 180 - -
Pumo4g01380 227 Gene3D - 2 199 IPR027417 -
Pumo4g01380 227 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Pumo4g01380 227 SMART rab_sub_5 9 182 - -
Pumo4g01380 227 PRINTS Transforming protein P21 ras signature 49 71 - -
Pumo4g01380 227 PRINTS Transforming protein P21 ras signature 32 48 - -
Pumo4g01380 227 PRINTS Transforming protein P21 ras signature 157 179 - -
Pumo4g01380 227 PRINTS Transforming protein P21 ras signature 9 30 - -
Pumo4g01380 227 PRINTS Transforming protein P21 ras signature 111 124 - -
Pumo4g01380 227 PANTHER RHO FAMILY GTPASE 6 197 IPR003578 GO:0005525|GO:0007264
Pumo4g01380 227 ProSiteProfiles small GTPase Ras family profile. 4 224 IPR001806 GO:0003924|GO:0005525
Pumo4g01380 227 SMART ras_sub_4 6 182 - -
Pumo4g01380 227 NCBIfam small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Pumo4g01380 227 FunFam Rac-like GTP-binding protein 3 2 199 - -
Pumo4g01380 227 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Pumo4g01380 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01380 Pumo-Chr4 17516649 17520129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01380 9 182 EF-hand Containing Proteins AT5G27540 23.563 1.96e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01380 K04392 - gmx:100791566 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01380 4 17516649 17520129 Pumo4g01380 4 17516649 17520129 ECH