Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01357 ATGGTTTCCGATTCAATCGCCGCCGTGCCGATTCCTTCCGCCGCAAACACTAAGAATCCGGGGAAGAAGAAGAGGACCAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAGGTGCGGTGAAGAGCAAGGGGTGCAAGGACGGAGTGGACGATGACGGCCACGCGCCGCCGTCGCCGGCGGGGAAACACGGAAAGCACTCGTTGGAGCCGCTGAACACGAGGGGCAGGGGCGAAGAGGACGATGGATTGATCCATCACGACAGCGATTCGGAGTCTCCGACCAACTGTCCCGTCGGCGTGTTGTGCGGCACCGATTCGGGGACGAATTTCACCGGCAGCAGCAGCGGCGGTAGCAGCAGCAGCAGTAGCAGCAGCTCCAGCAGCGGTGGGTGCTGTTCCGGGAACGTCACCGAGGTGGAGGAAGAAGAAGGTGATGATGATGACGATGATGGATGCTTGGATGATTGGGAGGCTATGGCAGATGCTTTAGCGGCCGATGACAAGCGTGAAAACCCTTGTCCGGATTCGCCCCCTGTGGCTTTGCCTTGTGAAGGGTCGAATTTAGGGTCTCCGAATTCGAAACCCGAGAGTGGTAGAATGGTTCCTTGCTCTGGTAATAGCCGAGCGTGGAGGGCAGATGATGCCTTTCGCCCTCAGAGTTTGCCCAATTTGTCTAAGCAGCACAGTATGCCAAACCCTGATCGGCGTGGGGTCCCTTGGGGTCGCGCCCCCACGCCATCATCGTGTCCAATTTGCTGCGAGGATCTCGATTTGACGGACACGAGTTTCTTGCCTTGTCTCTGTGGGTTTCGGCTTTGCCTCTTTTGCCACAAGAGGATTATGGAAGAGGATGGGCGTTGTCCCGGGTGTAGGAAGCCCTATGAGTGTGAGCCTGTCGAGACAGAGGCTAGTGTGGTTGGTGGCAGTCTCACTCTTCGGTTGGCACGTTCGTGCAGCATGATCGAGAGGTCTTGA 1005 0.5721 MVSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKSKGCKDGVDDDGHAPPSPAGKHGKHSLEPLNTRGRGEEDDGLIHHDSDSESPTNCPVGVLCGTDSGTNFTGSSSGGSSSSSSSSSSSGGCCSGNVTEVEEEEGDDDDDDGCLDDWEAMADALAADDKRENPCPDSPPVALPCEGSNLGSPNSKPESGRMVPCSGNSRAWRADDAFRPQSLPNLSKQHSMPNPDRRGVPWGRAPTPSSCPICCEDLDLTDTSFLPCLCGFRLCLFCHKRIMEEDGRCPGCRKPYECEPVETEASVVGGSLTLRLARSCSMIERS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01357 334 CDD mRING-HC-C4C4_CNOT4 258 302 IPR039515 -
Pumo4g01357 334 MobiDBLite consensus disorder prediction 77 98 - -
Pumo4g01357 334 MobiDBLite consensus disorder prediction 1 212 - -
Pumo4g01357 334 SUPERFAMILY RING/U-box 256 309 - -
Pumo4g01357 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 316 IPR013083 -
Pumo4g01357 334 MobiDBLite consensus disorder prediction 148 166 - -
Pumo4g01357 334 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 255 331 IPR039780 GO:0004842|GO:0030014
Pumo4g01357 334 ProSiteProfiles Zinc finger RING-type profile. 259 301 IPR001841 -
Pumo4g01357 334 MobiDBLite consensus disorder prediction 196 210 - -
Pumo4g01357 334 MobiDBLite consensus disorder prediction 54 69 - -
Pumo4g01357 334 MobiDBLite consensus disorder prediction 99 144 - -
Pumo4g01357 334 Pfam RING/Ubox like zinc-binding domain 259 305 - -
Pumo4g01357 334 FunFam RING/U-box superfamily protein 252 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01357 Pumo-Chr4 17212169 17216211 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01357 - - gmx:100792365 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01357 4 17212169 17216211 Pumo4g01357 4 17212169 17216211 ECH