Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01341 ATGAAGATGAGTGAGATGTGGACAACAATGGGGTCAACCTTAGCTAGCTTCATGTTCTTGTGGACGATCATGAGGCAGTACTGTCCCTACGGGGTTCAACGTTTCTTTGAGAAGTACACACATAGGATCATGAGTTACTTCTACCCCTACATTCGAATCTCCTTCCATGAGTACATGGGAGACAGGTTGAAGCGTAGTGAGGCCTATGCAGCTGTGGAGGCATACCTATGTGCCAACACATCGAAGAGTGCTAAAAGGCTCAAAGCTGAAATGGGAAAGGACAGCACCAACTTGGTGTTGACCATGGATGAGTATGAAAGAGTAACGGATGACTATGAAGGTGTAAAAGTTTGGTGGGTCTCTAGCAAAGTTATGTCACCAACAAGGTCCCCAATGTCTTATTATCCAGAACAGGAGAAAAGGTTCTACAAGCTCACTTTTCACTGCAAGTATAGGGACATGGTAATTGAGTCCTATTTGGAGCATGTGATGAGGGAGGGGAAGGAGATTCGTTTGAGGAACCGGCAGAGGAAGTTGTACACTAATAGCCCTGGCTATAAGTGGCCAAGTTACAAGCAAACGATGTGGAGCCACATTGTGTTTGAGCACCCTGCAACGTTTGACACAATGGCCATGGAGCCTGAGAAGAAGAAAGAGATCATTGAGGATTTGGTCACTTTCAGCAAGAGCAAGGATTTCTATGCACGGATTGGGAAGGCATGGAAGAGAGGGTACCTTCTTTATGGCCCTCCCGGGACTGGCAAGTCCACCATGATTGCGGCAATGGCCAATTTGTTGGCCTATGATGTCTATGACTTGGAGCTCACTGCAGTGAAGGACAACACCGAGCTGAGGAAGCTTTTGATTGAGACAACAAGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCTCTTGATCTTACAGGGCAGAGGAAGAAGAAGGCGGATAAGTTGTCGGACGACGAGGCCGAGAAGGATGTTGTTGGTGGAAGGAAAGAGGCCAAGGAGGAAGGAGGGTGTGGCAGCAAGGTCACACTCTCAGGGCTGTTGAATTTCATTGATGGGATTTGGTCTGCTTGTGGAGGGGAGAGGTTGATTGTGTTCACAACCAATTATGTGGAGAAGCTTGATCCTGCTCTCATTAGAAGGGGGAGAATGGACAAGCACATTCAGCTATCTTATTGCACTTTTGATGGCTTTAAAGTGCTTGCCAACAATTACTTGAAGCTTGAAACTCATCCATTGTTTGACACTATTAAGAGGCTTATAGGGGAGGTCAAGATCACCCCAGCTGATGTTGCTGAAAACCTTATGCCTAAGTCCCCACTGGATGATCCTCACAAGTGTCTCTCAAACTTGATTGAAGCACTTGAGGAACCTGCAAAAGCTGAGGAGCTGAGACAGAGTAGTAGTAGTCCCATTAAGGAGGAACATGAAGAACTTCTTCAACAAAATGGGTCCATTAAGTAA 1473 0.4589 MKMSEMWTTMGSTLASFMFLWTIMRQYCPYGVQRFFEKYTHRIMSYFYPYIRISFHEYMGDRLKRSEAYAAVEAYLCANTSKSAKRLKAEMGKDSTNLVLTMDEYERVTDDYEGVKVWWVSSKVMSPTRSPMSYYPEQEKRFYKLTFHCKYRDMVIESYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFDTMAMEPEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLYGPPGTGKSTMIAAMANLLAYDVYDLELTAVKDNTELRKLLIETTSKSIIVIEDIDCSLDLTGQRKKKADKLSDDEAEKDVVGGRKEAKEEGGCGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIQLSYCTFDGFKVLANNYLKLETHPLFDTIKRLIGEVKITPADVAENLMPKSPLDDPHKCLSNLIEALEEPAKAEELRQSSSSPIKEEHEELLQQNGSIK 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01341 490 ProSitePatterns AAA-protein family signature. 365 384 IPR003960 GO:0005524|GO:0016887
Pumo4g01341 490 MobiDBLite consensus disorder prediction 462 490 - -
Pumo4g01341 490 CDD RecA-like_BCS1 220 391 - -
Pumo4g01341 490 SMART AAA_5 241 397 IPR003593 GO:0016887
Pumo4g01341 490 Gene3D - 391 458 - -
Pumo4g01341 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 459 IPR027417 -
Pumo4g01341 490 MobiDBLite consensus disorder prediction 462 484 - -
Pumo4g01341 490 FunFam AAA-ATPase ASD, mitochondrial 197 391 - -
Pumo4g01341 490 Pfam ATPase family associated with various cellular activities (AAA) 246 394 IPR003959 GO:0005524|GO:0016887
Pumo4g01341 490 PANTHER BCS1 AAA-TYPE ATPASE 9 465 - -
Pumo4g01341 490 Pfam Domain associated at C-terminal with AAA 29 121 IPR025753 -
Pumo4g01341 490 Gene3D - 201 390 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01341 Pumo-Chr4 17050703 17052952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01341 206 421 Miscellaneous Gene Families AT5G58870 28.571 9.21e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01341 - - gmx:100798176 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01341 4 17050703 17052952 Pumo4g01341 4 17050703 17052952 ECH