Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01318 ATGCAGTACCTGTTTGTGAAAATCTGGAAGGCGCGTGGGCTCGCTCCTCCCATTGAAGGCCCATTCGTGAGGGTTCGGATGTCGAGCCAATCCAGGAGAAAGCCCGCGAGCTACCGGCCCAACGAGCCCACTGACTCGCCTGAGTGGAACCATGTGTTTTTGCTGGATTACAACAAGACCGACGCCAACAGCGCCACGCTGGAGATTTCGGTTTGGGATTCGACGTCGGAGAATTTTCTGGGCGGCGTTTGCTTCGACCTTTCTGACGTTCCGGTAAGAGATCCTCCGGACAGCCCCTTGGCGCCGCAATGGTACCGCCTCGAAGGAGGCACAGCCGATCAGAATCCCGGCAGAGTTTCCGGCGACATTCAGTTGTCCGTGTGGATCGGGACGCAATCCGACGAGGCGTTCCAGGAAGCTTGGATCTCAGATGCACCGTACGTGGCGCACACTCGATCCAAGGTTTATCAATCGCCGAAGCTCTGGTACCTGCGCGTGACGGTGGTGGAGGCGCAAGACCTGAATATTGCTCCCAATCTGCCTCCGTTGACGGCGCCGGAAGTGAGGGTGAAGGTGCAATTAGGGTTCCAATCGCAGCGAACACGGCGAGGATGCATGAACCACCGTAGCTTATCGTTCCACTGGAACGAGGACCTTCTCTTCGTGGCCGGGGAGCCTCTAGAAGATTCTGTCATCGTTCTGCTTAGAAGATCGGACCAGCAAGGAACCGGCGCTGCTAGGCCACATCGTGATTCCGCTGAGCTCAATCGAGCAGCGAATCGACGAGCGCTACGTGGCAGCGAAGTGGTTCCCCTTAGAGGGCGGGCCGTACTGCGGGAGAGTCCACCTGCGCCTCTGCCTGGAGGGAGGGTATCACGTGCTGGACGAAGCGGCGCACGTGTGCAGCGACTTCCGTCCGACGGCGAAACAGTTGTGGAAACCGGCGGTGGGGATTCTAGAGCTTGGGATTCTGGGCGCTCGCGGGCTACTCCCGATGAAATCGAAAGGCGGTGGAAAGGGGTCCACCGATGCTTACTGTGTGGCCAAGTATGGGAAAAAGTGGGTCCGGACCCGCACCGTAACCGACACCTTCGATCCACGCTGGAACGAGCAGTACACGTGGCAGGTCTACGACCCCTGCACGGTCCTCACCGTTGGAGTGTTCGACAACTGGCGCATGTTTGCTGA 1188 0.5884 MQYLFVKIWKARGLAPPIEGPFVRVRMSSQSRRKPASYRPNEPTDSPEWNHVFLLDYNKTDANSATLEISVWDSTSENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGGTADQNPGRVSGDIQLSVWIGTQSDEAFQEAWISDAPYVAHTRSKVYQSPKLWYLRVTVVEAQDLNIAPNLPPLTAPEVRVKVQLGFQSQRTRRGCMNHRSLSFHWNEDLLFVAGEPLEDSVIVLLRRSDQQGTGAARPHRDSAELNRAANRRALRGSEVVPLRGRAVLRESPPAPLPGGRVSRAGRSGARVQRLPSDGETVVETGGGDSRAWDSGRSRATPDEIERRWKGVHRCLLCGQVWEKVGPDPHRNRHLRSTLERAVHVAGLRPLHGPHRWSVRQLAHVC 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01318 395 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Pumo4g01318 395 SMART C2_3c 3 99 IPR000008 -
Pumo4g01318 395 SMART C2_3c 163 284 IPR000008 -
Pumo4g01318 395 Gene3D C2 domain 147 251 IPR035892 -
Pumo4g01318 395 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 158 240 IPR035892 -
Pumo4g01318 395 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 1 238 IPR047259 -
Pumo4g01318 395 Gene3D C2 domain 1 146 IPR035892 -
Pumo4g01318 395 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 147 IPR035892 -
Pumo4g01318 395 MobiDBLite consensus disorder prediction 275 328 - -
Pumo4g01318 395 Pfam C2 domain 162 240 IPR000008 -
Pumo4g01318 395 Pfam C2 domain 3 105 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01318 Pumo-Chr4 16783827 16785014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01318 1 243 Lipid Metabolism Gene Families AT1G74720 72.470 1.28e-115 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01318 - - gmx:100783882 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01318 4 16783827 16785014 Pumo4g01318 4 16783827 16785014 ECH