Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01311 ATGTCGACTTCTGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCGCCTGCTGGAATCAGTGGTGCCCCTCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGCACGTTTAAGTTGACTCTCCAATTTACTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAACATTTATGCGGATGGAAGTATTTGTTTGGATATATTACAAAACCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACTTCTATCCAGGTATTATTTTGTATAGTATGTAGTCAACAATTCTACATTTCTTTTCATTTCATCTTTAGTATATTACAAATGAAGATTGCAAGCACATACATTTACATAATTAACTCTACCTTTGTGGTCTGGTTTTGA 459 0.3856 MSTSARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQVLFCIVCSQQFYISFHFIFSILQMKIASTYIYIINSTFVVWF 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01311 152 Gene3D Ubiquitin Conjugating Enzyme 1 122 IPR016135 -
Pumo4g01311 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 152 IPR000608 -
Pumo4g01311 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Pumo4g01311 152 SUPERFAMILY UBC-like 1 114 IPR016135 -
Pumo4g01311 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 114 - -
Pumo4g01311 152 CDD UBCc 7 114 IPR000608 -
Pumo4g01311 152 SMART ubc_7 7 138 - -
Pumo4g01311 152 Pfam Ubiquitin-conjugating enzyme 8 113 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01311 Pumo-Chr4 16700714 16704126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01311 7 109 Miscellaneous Gene Families AT1G17280 31.481 3.53e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01311 K10573 - twl:119992536 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01311 4 16700714 16704126 Pumo4g01311 4 16700714 16704126 ECH