Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01308 ATGACGACAACAACAACTACAAGGTTGCATTGCATTGCATTGCAGTATTCACCCACACTCCACACAAAACAAATGTCAAATCCTGCTTCTGCGAGCTTCTGGACTCAAGCAAACGCGCTTCTCCGCAAGAATCTAACCTTCCAGAAACGGAACGTGAAAACGAACGTTCGCCTGGTACTGTTCCCGGTGGTCCTCTGCTTGTTGCTTTTCGGGATCCAACGCTTAATCGACACGCAAATCGGTGGGTCCGCCTTCAAATGCGGCTGCGTCTGCGCCAACAACACAACCCAAGACGACTCTCAGTGCCCTCACTCAGAGAAAGTGTGTGGGCTCCAGTATTCCGATTCCCTTCAGGCTGCCGCGTGCGCCATTCCCAAACCCGTCGAATGGCCACCGCTCTTGCAACTTCCGGCCCCCCCGGACCGCGCCGTGCGAACCCCTTCTCTTCCCTTTTCGGATTTGCCCGATGCGTCTTGCAGGACAACCGACTCCTGTCCTCTTACTTTGCTCTTCACCGCACAGAATCGCTCCTTTGCAGAAAACGTGGCTGCAAATATGTTTGGGAGCGCCTTGAGTATAAGTGACTTTGGTAGTGATTTCTTGGCTAGTTTGGCCGTGAATGTACTGGGATCTGAATCAACACCCGGGAGAAACAATTTTATTGAAAATGCTTTCTCTCCGGGTCTCCCCATTTATTATCTACAAACAAAGTGCACAGACACAGAGAAATCTGGACTCTCCTTTCTCTCCCTGCCGGGAGCAGACAATGAGATCAAGTGTGCTCAGGCTCTAAATTTATGGCGTAATAGTTCTACTGAGATCAACAGTGAACTATATAAAGGTTATCAAAGAGGTAACACAGATGGACAAGTCAATGAGATAGTTTCAGCTTTTGATTTTCTAAATTCAAACGGGAATAGATATAATGTCAGTATATGGTACAACTCAACCTACAAGCGAGACACTGGATTTGGTCCTAGTGTGTTGCTGCGGATTCCCCGTTCTATAAATCTGATATCAAATTCCTACCTGCAGTTTCTGCTTGGACCTGGAACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAGCCTGAGACCAGCTTTAGGCTTGAGATATCTTCTCTTCTGGGAACTCTGTTCTTTACATGGGTCATCCTGCAGCTTTTTCCTGTTGTTCTGACATCACTAGTATATGAGAAGCAACAAAAATTAAGAATCATCATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATGGTTATTTTCTTGCCATATCAGTAATCTACATGTTGTGTTTTGTGATATTTGGCTCACTCTTAGGATTAAAAAACTTCACAATCAATGACTACAGCATCCAATTTGTGTTTTATTTCATCTACATAAACTTACAAATTGCGCTGGCGTTTTTGGTGGCTTCCATATTTTCAAATGTTAAGACTGCTACAGTGACTGCATATATAGGTGTCTTTGGAACTGGGTTATTAGGTGGCTTTCTTTTCCAATTCTTTGTTCAAAATACGTCATTTCCAAGAGGGTGGATAGTTGTTATGGAGTTGTATCCTGGGTTTGCTTTGTATCGTGGGTTATATGAGTTAGCACAATTTTCCTTTGAAGGGACTAGTTCAGGGACTGGTGGTATGAAGTGGCAGGATCTGAGTGAAAGCACCAATGGCATGAAAGAGGTCTTAATTATCATGTTTGTTGAGTGGATAGTGATGCTTTTTGTTGCCTTCTACGTTGACCAAGTATTGTCGTCAGGAAGTAGAAAAAGTCCGCTTTTTTTCTTGAAAGGATTTCAGAAAAGGCCTCCTTTCCAGAAGCTTGATGCCCAACTGCAGGTGTCAAAAGTATTCTCTCAAATGGAGAAACCTGATGTCATCCAAGAGAAGGAGAAGGTGGAGCAACTGCTACTTGAACCAACTATTAATCATGCAATTGTATGTGACGACCTAAAAAAAGTCTATCCAGGGAGGGATGGAAATCCAGATAAATTTGCGGTGAGAGGGTTGTTCCTTTCTGTGCCTCATGGGGAATGCTTTGGTATGCTTGGTCCCAACGGAGCTGGGAAGACCTCTTTTATCAATATGATGATTGGTCTCACAAAGCCAACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGATGGAATATATACTACCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGTCTTGACACAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTTCATGGAGGAGTTGCTGATAAACAAGTTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCTTTAATTGGGGATCCCAGAGTTGTTTACATGGATGAACCAAGTTCCGGGTTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTTGTGAAGCATGCAAAACAGAACCGTGCAATTATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGACCGATTGGGAATATTTGTAAATGGTAGCTTGCAGTGTGTAGGAAATGCAAAGGAGCTGAAAGCAAGATATGGAGGAACTTACGTGTTCACAATGACAACATCTTCAGACCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAACAAGATATACCATCTCTCTGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTTAGAATAGCAGATGTATTCCAAGCTGTTGATGCTGCAAAGAGAAACTTCACTGTTTCTGCATGGGGTTTAGTGGACACCACATTGGAAGATGTGTTCATTAAGGTAGCACGGCTGCTGCTCCTTGTTCAGGCACATGAACAACATAAGAAAATTGGGTTTTATGAACTGAAGAGAGGAGATCTCAGGCTGAATTTGACAAATTACGGTGCTACAATTATCTCTGTCATAACCCCTGATAAACATGGGAAATTAGCCGATATTGTTCTTGGCTATGATTCCATTGATTCTTATAAGAATGATACAGTTTACTTCGGTGCCCTTATTGGACGTGTGGCAAATAGGATTGGAGGAGCTAAATTCACTTTGGATGGCAAAACCTACAAATTGCCCGCTAATGATCATGGGAACACACTTCACGGTGGCGCAAGAGGCTTCAGTGATGTTGTATGGTCAGTGGAATCCCACAAGAAACACAGTCATGTAACATTTACCTACGACAGTTTTGAAAATGAACAAGGCTTTCCTGGAAAACTTACGGTCTCTGTGACTTACATGCTCATTGGAACACACGAATTGGCTGTGAAAATGATTGCCAAGCCAGTGGACAAAGCCACACCAGTGAATCTAGCGCAGCATACTTACTGGAACCTTGGGGGCCACAACAGTGGTGACATTCTTTCTCACGCTGTTCAGATCTTTGGCTCATACATCACACCAGTGGACAAGCTTCTCATTCCCACAGGGGAAATCATATCTGTTAAGGGCACCCCATATGATTTCCTTGAACCAAAAAAAGTTGGAAGCCAGATTCAGGAAGGTCTATATGACATGAACTATGTGCTAGACAAAAGTTTCCAAAAGCATTTTAACAAGGCTGCTGTGGTGAGAGACCCTGTTTCTGGGAGGAAATTGGAGCTGTGGTCAAACCAACTTGGTCTGCAGTTCTACACTAGTGGCCAGTTGAATGCTACCAAAGGCAAGGATGGGGCCATATACCACAAGCATGCCGGTATTGCCTTGGAGACACAGGGTTTCCCAGATTCTGTGAATTACCCTTACTTTCCATCACAGATTGTGAAGCCTGGGGAGATTTACGAGCACAGCATGCTTTACAGATTCACAGCTAACTAA 3912 0.4353 MTTTTTTRLHCIALQYSPTLHTKQMSNPASASFWTQANALLRKNLTFQKRNVKTNVRLVLFPVVLCLLLFGIQRLIDTQIGGSAFKCGCVCANNTTQDDSQCPHSEKVCGLQYSDSLQAAACAIPKPVEWPPLLQLPAPPDRAVRTPSLPFSDLPDASCRTTDSCPLTLLFTAQNRSFAENVAANMFGSALSISDFGSDFLASLAVNVLGSESTPGRNNFIENAFSPGLPIYYLQTKCTDTEKSGLSFLSLPGADNEIKCAQALNLWRNSSTEINSELYKGYQRGNTDGQVNEIVSAFDFLNSNGNRYNVSIWYNSTYKRDTGFGPSVLLRIPRSINLISNSYLQFLLGPGTKMLFEFVKEMPKPETSFRLEISSLLGTLFFTWVILQLFPVVLTSLVYEKQQKLRIIMKMHGLGDGPYWMISYGYFLAISVIYMLCFVIFGSLLGLKNFTINDYSIQFVFYFIYINLQIALAFLVASIFSNVKTATVTAYIGVFGTGLLGGFLFQFFVQNTSFPRGWIVVMELYPGFALYRGLYELAQFSFEGTSSGTGGMKWQDLSESTNGMKEVLIIMFVEWIVMLFVAFYVDQVLSSGSRKSPLFFLKGFQKRPPFQKLDAQLQVSKVFSQMEKPDVIQEKEKVEQLLLEPTINHAIVCDDLKKVYPGRDGNPDKFAVRGLFLSVPHGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMDGIYTTMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSVLTQAVEESLKSLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPRVVYMDEPSSGLDPASRKSLWNVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVFTMTTSSDHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRIADVFQAVDAAKRNFTVSAWGLVDTTLEDVFIKVARLLLLVQAHEQHKKIGFYELKRGDLRLNLTNYGATIISVITPDKHGKLADIVLGYDSIDSYKNDTVYFGALIGRVANRIGGAKFTLDGKTYKLPANDHGNTLHGGARGFSDVVWSVESHKKHSHVTFTYDSFENEQGFPGKLTVSVTYMLIGTHELAVKMIAKPVDKATPVNLAQHTYWNLGGHNSGDILSHAVQIFGSYITPVDKLLIPTGEIISVKGTPYDFLEPKKVGSQIQEGLYDMNYVLDKSFQKHFNKAAVVRDPVSGRKLELWSNQLGLQFYTSGQLNATKGKDGAIYHKHAGIALETQGFPDSVNYPYFPSQIVKPGEIYEHSMLYRFTAN 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01308 1303 Gene3D - 968 1302 IPR014718 GO:0030246
Pumo4g01308 1303 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 651 888 IPR003439 GO:0005524
Pumo4g01308 1303 CDD ABC_subfamily_A 655 876 - -
Pumo4g01308 1303 Pfam ABC transporter 676 817 IPR003439 GO:0005524
Pumo4g01308 1303 FunFam ABC transporter A family member 7 640 916 - -
Pumo4g01308 1303 ProSitePatterns ABC transporters family signature. 790 804 IPR017871 GO:0005524|GO:0016887
Pumo4g01308 1303 Pfam Aldose 1-epimerase 981 1299 IPR008183 GO:0005975|GO:0016853
Pumo4g01308 1303 Gene3D - 643 918 IPR027417 -
Pumo4g01308 1303 SMART AAA_5 681 865 IPR003593 GO:0016887
Pumo4g01308 1303 SUPERFAMILY Galactose mutarotase-like 972 1300 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pumo4g01308 1303 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 623 970 IPR026082 GO:0016020|GO:0055085|GO:0140359
Pumo4g01308 1303 Pfam ABC-2 family transporter protein 304 584 IPR013525 GO:0016020|GO:0140359
Pumo4g01308 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 884 IPR027417 -
Pumo4g01308 1303 CDD galactose_mutarotase_like 981 1300 IPR047215 GO:0016853
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01308 Pumo-Chr4 16665692 16680357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01308 955 1303 Miscellaneous Gene Families AT3G47800 59.259 8.13e-143 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01308 - - gmx:100792897 1723.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01308 4 16665692 16680357 Pumo4g01308 4 16665692 16680357 ECH