Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01283 ATGGCAACGGCACCAGCAGCTACCTTCACTATTGGAACCACCGGTTCCCTCGGCCAAAGAGGAAGCTCGCTTCCTCAATCAAAGTCTTTTGGGTTGAGGTTCAACTCCCAGAATCATTTGAAGACTTTCTGTGGCCTCAAGGCCATGTCATCTGTCAGATGTGAGTCAGAATCATCGTTCTTGGGTAACAAAACTGGTGCTGCTCTGCGGGCATCTTTTGCATCCAAAGCTCAAAAGGAAAACAACCAAAACTTCAACCACAACTCGCAGCCTCAGGCTTCGTACAAAGTTGCAGTTCTCGGTGCTGCCGGAGGGATAGGTCAGCCTCTGGCGCTTCTCATCAAGATGTCACCTTTAGTTTCCGACCTGCATCTCTACGATATTGCAAATGTCAAGGGAGTTGCTGCTGATCTCAGTCACTGCAACACACCCTCACAAGTCAAGGATTTCACTGGACCTTCTGAGTTGGCGAATTGTTTGAAGGACGTGAATGTTGTTGTCATACCCGCCGGCGTTCCAAGGAAGCCCGGCATGACTCGCGACGACCTTTTCAACATCAATGCCGGCATAGTCAGGGACTTGGTTTCGGCTGTTGCGGATAATTGCCCTGATGCTTTTATTCAAATTATCAGTAACCCTGTGAACTCTACTGTGCCTATTGCTGCAGAGGTTTTGAAACAGAAGGATGTCTATGATCCTAAGAAGCTCTTTGGTGTTACCACACTGGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAGGAAGAACCTAAAGCTGATCGATGTCGATGTCCCAGTTGTTGGTGGCCATGCTGGGATTACCATTCTTCCTCTCTTGTCAAAGACAAGACCCTCAGTGAGTTTCACTGACGAAGAAATTGACGAGTTGACGGTCAGGATTCAAAACGCTGGAACTGAAGTTGTTGAAGCAAAGGCAGGTGCAGGGTCTGCTACCTTGTCGATGGCATATGCGGCAGCTAGATTTGTTGAATCGTCTCTCCGTGCTCTTGATGGAGATGGGGATGTGTATGAGTGCTCATATGTGCAATCAGATTTGACTGACCTTCCATATTTTGCTTCAAGGGTGAAGCTTGGTAGGAAAGGAGTTGAGGCTTTAATTCCATCTGACCTCCAAGGGTTGACTGACTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAACTCAAGGCCAGCATAGAGAAGGGGATTGCTTTTGCTCAGAAGCAAGCTGTTGCTGCTTAA 1242 0.4783 MATAPAATFTIGTTGSLGQRGSSLPQSKSFGLRFNSQNHLKTFCGLKAMSSVRCESESSFLGNKTGAALRASFASKAQKENNQNFNHNSQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADLSHCNTPSQVKDFTGPSELANCLKDVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPDAFIQIISNPVNSTVPIAAEVLKQKDVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEEIDELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSYVQSDLTDLPYFASRVKLGRKGVEALIPSDLQGLTDYEQKALEALKPELKASIEKGIAFAQKQAVAA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01283 413 PANTHER MALATE AND LACTATE DEHYDROGENASE 75 409 - -
Pumo4g01283 413 NCBIfam malate dehydrogenase 96 407 IPR010097 GO:0006099|GO:0030060
Pumo4g01283 413 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 239 IPR036291 -
Pumo4g01283 413 Gene3D - 240 411 IPR015955 GO:0003824|GO:0016616
Pumo4g01283 413 Pfam lactate/malate dehydrogenase, NAD binding domain 96 238 IPR001236 GO:0016491
Pumo4g01283 413 CDD MDH_glyoxysomal_mitochondrial 95 406 IPR010097 GO:0006099|GO:0030060
Pumo4g01283 413 FunFam Malate dehydrogenase 93 239 - -
Pumo4g01283 413 SUPERFAMILY LDH C-terminal domain-like 239 406 IPR015955 GO:0003824|GO:0016616
Pumo4g01283 413 ProSitePatterns Malate dehydrogenase active site signature. 239 251 IPR001252 GO:0006108|GO:0016615
Pumo4g01283 413 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 240 405 IPR022383 GO:0016616
Pumo4g01283 413 FunFam Malate dehydrogenase 240 408 - -
Pumo4g01283 413 Gene3D - 93 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01283 Pumo-Chr4 16371866 16374043 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01283 K00026 - gmx:100783173 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01283 4 16371866 16374043 Pumo4g01283 4 16371866 16374043 ECH