Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01248 ATGTCTGGTTCAAAGAAATCTCCTTTGAAGATTGCTAAACCTAGCTCTGTTGAATCTTGGACAAATCCATTTGATTCTGATGATGAGGGAAAGGATACCAAAAAGTATAGTTCCTCTAGAAAGACTTCTTCAGATCGCGCACTTGTTACACTGGAAGTTAACACCAACCCCTTTGATGATGACATTGATGCCAATAAGAAATCTTCATCAACTTCATATGCCTTTCAATCTGCCAACCGGAACAAGTATAAGAATGATTTCCGCGACTCTGGTGGATTAGAGAATCAATCGGTTCAAGAACTGGAGAATTATGCTGTTTACAAGGCTGAAGAGACTACAAATTCAGTCAACAATTGTTTGAAGATAGCAGAGAACATAAGAGAGGATGCTACCAAGACACTAGTCACACTTCATCAACAGGGTGAACAAATTACCAGGAGTCACCATGTTGCTGCTGACATTGATCATGATCTAAGCCGGGGAGAAAAGCTCCTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAACCAAAGAAGACACGTGCAATACAAGGCCCTGTTATTGTTGGAGATGATCCGGTCAGGAGAAAGGGCAATCACTTGGAGCAGAGAGAGAAGTTGGGGCTGACTTCTGCACCCAAAGGGCAGTCCAAGCTACGGTCCCCACCTCAAGAACCAACAAATGCACTTGAAAAAGTTGAGGTTGAAAAAAATAAGCAAGATGATGCACTATCAGATTTAAGTGATCTGTTAGGAGAGCTTAAAGGCATGGCTGTTGACATGGGATCCGAGATTGAGAGGCATAACAAAGCCCTGAATCATCTATACGATGATGTGGATGAGTTGAATTACCGAGTGAAAGGTGCTAATCAACGTGGCCGTCGTTTACTCGGAAAATAA 903 0.4275 MSGSKKSPLKIAKPSSVESWTNPFDSDDEGKDTKKYSSSRKTSSDRALVTLEVNTNPFDDDIDANKKSSSTSYAFQSANRNKYKNDFRDSGGLENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHHVAADIDHDLSRGEKLLGSLGGLFSKTWKPKKTRAIQGPVIVGDDPVRRKGNHLEQREKLGLTSAPKGQSKLRSPPQEPTNALEKVEVEKNKQDDALSDLSDLLGELKGMAVDMGSEIERHNKALNHLYDDVDELNYRVKGANQRGRRLLGK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01248 300 MobiDBLite consensus disorder prediction 1 74 - -
Pumo4g01248 300 MobiDBLite consensus disorder prediction 193 229 - -
Pumo4g01248 300 Gene3D - 232 299 - -
Pumo4g01248 300 SMART tSNARE_6 101 168 IPR000727 -
Pumo4g01248 300 SMART tSNARE_6 230 297 IPR000727 -
Pumo4g01248 300 Coils Coil 231 251 - -
Pumo4g01248 300 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 22 300 - -
Pumo4g01248 300 CDD SNARE_SNAP25N_23N_29N_SEC9N 103 167 IPR044766 GO:0005484|GO:0031201
Pumo4g01248 300 MobiDBLite consensus disorder prediction 24 41 - -
Pumo4g01248 300 FunFam SNAP25 homologous protein SNAP33 92 169 - -
Pumo4g01248 300 Gene3D - 92 169 - -
Pumo4g01248 300 SUPERFAMILY SNARE fusion complex 96 166 - -
Pumo4g01248 300 CDD SNARE_Qc 238 296 - -
Pumo4g01248 300 FunFam SNAP25 homologous protein SNAP33 232 299 - -
Pumo4g01248 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 235 297 IPR000727 -
Pumo4g01248 300 SUPERFAMILY SNARE fusion complex 234 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01248 Pumo-Chr4 15966675 15969818 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01248 K18211 - gmx:100809874 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01248 4 15966675 15969818 Pumo4g01248 4 15966675 15969818 ECH