Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01225 ATGTCAAAAATGGCGATTCTTGTGACGCAGGGGTATTTGGTTGTTGTTGGGATATTGGTTGCTTATTCTTTTACTATGTTGCCTGAGTGGACCACGTGGGCCTTGCTTGTTGCTATGGCGTTGTATGATCTTGCTGCAGTTTTGTTACCAATTGGGCCGTTGAGGATTTTGGTAGAGCTTGCAATTTCAAGGGATGAGGAAATTCCAGCATTGGTTTATGAGGCTAGGCCAGTGAACCATGGTAATTTGGATGCTAGGGATGTTGTGCGGCGGCGGTTGTGGAGAGATAGGAGGGTTCAGAATTTGAATGCTAACTCAGTGTTGGCTCATGGCCCCAATGCTGAATCACACTCTGATTTGGATGCAAGCACTGGCAATAACCGGGATGGCGCGAACTTGGTTAGGGAAAATGCTTCTTTGAATTCAAATTTGAATGCTAATAGTTCTAGTGGCTCCTATGGTTACAGAAATTTGGTGAGTGTGGAAGAGGGACAGGTGCGAGTTCAAGAGACTGGTTCGGACCTTTCTGTGCCCTTGATTGATCATGGAATGAATGTCCAGCTCAGTAGGGGGGAAGATGCTACACCAATTGAAAATTTGATGTTAGAGGGAATTGGATTGGGTACTTCTGGTTCTATCAAGTTAGGACTGGGAGACTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTATATGACGGTGTATGCGTGTTATCTTGCTATAGTTGCGGGTCTTGGCATAACTTTGATGCTTCTGGCTTTTTATCAGAAAGCTTTGCCTGCTCTTCCCGTGTCAGTCGGACTGGGCGTGTTATTTTATTTCTTGACCAGGCTCTTACTTGAAGTATTTGTAGTACAATGTTCCTTAAATCTCCTGTTGTTCTAA 897 0.4426 MSKMAILVTQGYLVVVGILVAYSFTMLPEWTTWALLVAMALYDLAAVLLPIGPLRILVELAISRDEEIPALVYEARPVNHGNLDARDVVRRRLWRDRRVQNLNANSVLAHGPNAESHSDLDASTGNNRDGANLVRENASLNSNLNANSSSGSYGYRNLVSVEEGQVRVQETGSDLSVPLIDHGMNVQLSRGEDATPIENLMLEGIGLGTSGSIKLGLGDFIFYSVLVGRAAMYDYMTVYACYLAIVAGLGITLMLLAFYQKALPALPVSVGLGVLFYFLTRLLLEVFVVQCSLNLLLF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01225 298 SMART psh_8 1 284 IPR006639 GO:0004190|GO:0016020
Pumo4g01225 298 PRINTS Presenilin family signature 26 33 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pumo4g01225 298 PRINTS Presenilin family signature 43 60 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pumo4g01225 298 MobiDBLite consensus disorder prediction 108 131 - -
Pumo4g01225 298 Gene3D Presenilin 207 290 IPR042524 -
Pumo4g01225 298 Pfam Presenilin 3 288 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pumo4g01225 298 FunFam Presenilin 189 289 - -
Pumo4g01225 298 PANTHER PRESENILIN 3 298 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01225 Pumo-Chr4 15592293 15593189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01225 1 298 Miscellaneous Gene Families AT2G29900 57.047 6.68e-101 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01225 K04505 - gmx:100780823 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01225 4 15592293 15593189 Pumo4g01225 4 15592293 15593189 ECH