Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01217 ATGGCGATGCCGGAAGCAATCCCTCTCACTACTCCCAGTGCTCAAGTTGTTGGCAATGCCTTTGTGGAGCAATATTATCACATTCTGCACCAATCCCCAGAATTAGTGCACAGATTTTATCAGGATTCAAGTTTCTTAAGCAGATCAGACAGCAAGGGTGTCATGACAACTGTGACAACTGTACAAGAAATCCATGAAAAGATTATTTCCCTGAAGTATGAAGATTATACAGCAGAAATAAAAACTGCAGATGCTCAGGAGTCACATAAGGAAGGTGTGATTGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCGCAGACATTCTTTCTGGCTCCACAAGAAAAAGGATATTATGTCTTGAATGACGTCTTTAGGTACATTGAGGAGAATGACACACCACAGTTAAATTCTGCCTCAGTAAATGTCATCAATGAAAATGCTGAGGCAGTGCATGAGCCAGAATCAGAGGATATACATGCTCCCAAACTTGTTGTGGAAGACACTGCAACTTTGGCTGAGGGTGAAAACCTTAATAATGGTGCTGAAGTTTATCATCCTCAGGATGAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGCGGAACCCCCTACTGATTTAAGTCAGAATGATATTGTTACGGTTCATGATTCAACTTCTGCTGTCCAGGATGATGCACCAAGGAGATCATATGCATCCATTGTAATGAAAAGTAACGTAGCATCTGGTCATGTCTATGTTCCCAGCCGAGCTGCAAGAGTGGCATCTGCTAAATCCAGTGAACAATGGCCTACTACTGCCAAATCAACTCCTTGGCCTGAGGCATTAGCTCCTAGTAGTGATAGTGCACCTGGGAGTAGTGATGTTCATGAAGAAGCTGAAGGCCACTCTATATACATACGGAACTTGCCATTTAATGCAACAGTTGAACAACTTGAAGAAGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGTATCCAAGTTAGAAGTAGCAAGCACGGATTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGTTCCATGCACAGTGCACTTGAGGCTTCACCTATCACTGTTGGTGAGCGACAAGCTGTTGTCGAGGAAAAGAGAACTACTACACGAGTCAGCGGTAGTGGCAGAGGGAGGTATCCTTCAGGAAGAGGTAGTTTCCGAAGCGACAGTTTCAGGGCGCGAGGGAAGTTTGGCAGTGGACGGGGTTATGGCAGAAATGAATTCAGAAACCAAGGAGAATTCTCAGGGCAACCTAGGAGTTCTCAACGGCCAAATCAAAACGGAGGTGGGCGTGGTGGACGTCAAGGTGTGGGGAACCGTAATTCTACACCATCAGCTTCAGCAGCATGA 1383 0.4411 MAMPEAIPLTTPSAQVVGNAFVEQYYHILHQSPELVHRFYQDSSFLSRSDSKGVMTTVTTVQEIHEKIISLKYEDYTAEIKTADAQESHKEGVIVLVTGCLTGKDNVRRKFSQTFFLAPQEKGYYVLNDVFRYIEENDTPQLNSASVNVINENAEAVHEPESEDIHAPKLVVEDTATLAEGENLNNGAEVYHPQDEEEGSVIDEEVAEPPTDLSQNDIVTVHDSTSAVQDDAPRRSYASIVMKSNVASGHVYVPSRAARVASAKSSEQWPTTAKSTPWPEALAPSSDSAPGSSDVHEEAEGHSIYIRNLPFNATVEQLEEVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMHSALEASPITVGERQAVVEEKRTTTRVSGSGRGRYPSGRGSFRSDSFRARGKFGSGRGYGRNEFRNQGEFSGQPRSSQRPNQNGGGRGGRQGVGNRNSTPSASAA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01217 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 361 IPR000504 GO:0003723
Pumo4g01217 460 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Pumo4g01217 460 MobiDBLite consensus disorder prediction 375 460 - -
Pumo4g01217 460 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Pumo4g01217 460 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Pumo4g01217 460 CDD RRM_SF 304 361 - -
Pumo4g01217 460 Gene3D - 294 383 IPR012677 -
Pumo4g01217 460 MobiDBLite consensus disorder prediction 262 299 - -
Pumo4g01217 460 Gene3D - 6 137 - -
Pumo4g01217 460 FunFam Ras GTPase-activating protein-binding protein 1 290 417 - -
Pumo4g01217 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 378 IPR000504 GO:0003723
Pumo4g01217 460 MobiDBLite consensus disorder prediction 421 440 - -
Pumo4g01217 460 SUPERFAMILY RNA-binding domain, RBD 298 404 IPR035979 GO:0003676
Pumo4g01217 460 MobiDBLite consensus disorder prediction 262 292 - -
Pumo4g01217 460 CDD NTF2 13 135 IPR018222 -
Pumo4g01217 460 FunFam Nuclear transport factor 2 family protein 8 137 - -
Pumo4g01217 460 SMART rrm1_1 303 374 IPR000504 GO:0003723
Pumo4g01217 460 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 13 431 IPR039539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01217 Pumo-Chr4 15547213 15553847 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01217 K24983 - gmx:100801253 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01217 4 15547213 15553847 Pumo4g01217 4 15547213 15553847 ECH