Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01210 ATGAACGGCTTAAGAAGTGAACGAGCCCCTCTCTTGGATGCTGAGCGTGGTGGAAGAGGAAAGAGGGATGGTGCCTCGGAAGGTCAAGTCTCAGACCTTGAACATGGTGATGCAGTGCCGGCGGCAAATGTGGGATTCTGTCGAGTGCTTTCACTTGCAAAACCTGAGGCTGGAAAGTTGGTGATCGGTACAGTGGCTCTGTTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCAAGGGAAATGCGAACTCCAGAGGAGAAAGATGAAGCTTTGACCGCTGTTAAGAACACCATACTAGAAATCTTTCTGATCGTTGTCTTTGGTTCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCCTTCTTTGATGTTACTCGAACTGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTGATTGGTCTGAGCTTCATGTTTGCGACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTAGCTTCATCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCTCAAGAAGATTATGAAATAACACGCTACTCAGAGAAAGTTGATGAAACACTTATGCTTGGTCTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCCACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAGTTTGACAATCAAGGGTTCCATGTCATCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGACGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCCAAGTCAGGAGAGAAATGTCCACTGGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTACTCATCCGGTGCTCAAGGGCATTACATTGAAACTGCATCCAGGATCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTCTGCTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGGACGCTGTTGATATAGAAAATGCTGCTAAAATGGCCAATGCACATGAATTTGTATCAAAATTCCCAGAAAAATACCAGACTTTTGTTGGAGAGCGTGGGGTGAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTTCTTATGGACCCAAAAATTCTCCTCTTGGATGAAGCCACCAGTGCCCTAGATGCAGAAAGTGAATACCTAGTGCAGGATGCCATGGAATCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCACAGGTTATCAACTGTTAAAACTGCTGATACTGTTGCAGTTATATCTGATGGCCAAGTAGTTGAGAGTGGCAACCATGAAGAGCTTCTCAACAAGAACGGTGTCTATACTGCATTGGTCAAGAGACAACTGCAAACAACAAAAGCCGAAATCACGGTCTAG 1902 0.4306 MNGLRSERAPLLDAERGGRGKRDGASEGQVSDLEHGDAVPAANVGFCRVLSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSREMRTPEEKDEALTAVKNTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTALIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEITRYSEKVDETLMLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGASLTIKGSMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGEKCPLGDQDGEVELDDVWFAYPSRPTHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDAVDIENAAKMANAHEFVSKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVESGNHEELLNKNGVYTALVKRQLQTTKAEITV 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01210 633 PIRSF ABC_prm/ATPase_B 17 632 - -
Pumo4g01210 633 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 46 628 IPR039421 -
Pumo4g01210 633 CDD ABC_6TM_AtABCB27_like 63 359 - -
Pumo4g01210 633 MobiDBLite consensus disorder prediction 9 30 - -
Pumo4g01210 633 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Pumo4g01210 633 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Pumo4g01210 633 MobiDBLite consensus disorder prediction 1 32 - -
Pumo4g01210 633 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo4g01210 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
Pumo4g01210 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 623 IPR027417 -
Pumo4g01210 633 FunFam ABC transporter B family member 25 383 625 - -
Pumo4g01210 633 Gene3D - 383 628 IPR027417 -
Pumo4g01210 633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo4g01210 633 SMART AAA_5 412 606 IPR003593 GO:0016887
Pumo4g01210 633 FunFam ABC transporter B family member 25 112 382 - -
Pumo4g01210 633 SUPERFAMILY ABC transporter transmembrane region 48 365 IPR036640 GO:0005524|GO:0016020
Pumo4g01210 633 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524|GO:0016887
Pumo4g01210 633 Gene3D ABC transporter type 1, transmembrane domain 112 382 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01210 Pumo-Chr4 15453391 15465058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01210 62 623 Calmodulin-binding Proteins AT2G36910 37.368 1.04e-102 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01210 - - gmx:100810510 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01210 4 15453391 15465058 Pumo4g01210 4 15453391 15465058 ECH