Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01163 ATGTCATCAAAGCTTCAAGTTCAGCAACTCAATCAGTTAAGGGAGATATTCGGTCGATTCGACATGGACTCAGACGGAAGCCTCACAATGCTAGAGCTAGCAGCGCTTCTTAGGTCTCTGGGGCTGAAGCCCTCGGGCGACCAAGTCCAGGCCCTGTTAGCGAACATGGACTCAAACGCCAATGGCAAAGTGGAGTTTGACGAGTTGGTGAGAGCCATATTACCCGACATAAACGCACAGGTTTTGCTGAACCAAGAACAGCTCCTAGGGGTGTTCAAGTGCTTCGATCGTGACGGCAACGGTTACATATCGGCTGCGGAGTTGGCCGGGGCAATGGCCAAAATGGGTCAGCCCCTCACGTACCGAGAGCTCACGGAGATGATCAAAGAGGCTGACACGGATGGTGATGGCGTAATTAGCTTCACTGAGTTTGCCTCCATCATGGCTCGCTCTGCTTCTGATTTCCTAGGCCTCTCGTTGTGGTGA 486 0.5247 MSSKLQVQQLNQLREIFGRFDMDSDGSLTMLELAALLRSLGLKPSGDQVQALLANMDSNANGKVEFDELVRAILPDINAQVLLNQEQLLGVFKCFDRDGNGYISAAELAGAMAKMGQPLTYRELTEMIKEADTDGDGVISFTEFASIMARSASDFLGLSLW 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01163 161 FunFam Probable calcium-binding protein CML15 1 78 - -
Pumo4g01163 161 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Pumo4g01163 161 SUPERFAMILY EF-hand 5 150 IPR011992 -
Pumo4g01163 161 CDD EFh 87 149 IPR002048 GO:0005509
Pumo4g01163 161 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Pumo4g01163 161 FunFam probable calcium-binding protein CML18 79 155 - -
Pumo4g01163 161 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Pumo4g01163 161 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Pumo4g01163 161 PANTHER CALCIUM BINDING PROTEIN 84 148 - -
Pumo4g01163 161 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Pumo4g01163 161 SMART efh_1 12 40 IPR002048 GO:0005509
Pumo4g01163 161 SMART efh_1 48 76 IPR002048 GO:0005509
Pumo4g01163 161 SMART efh_1 123 151 IPR002048 GO:0005509
Pumo4g01163 161 SMART efh_1 87 115 IPR002048 GO:0005509
Pumo4g01163 161 Gene3D - 1 81 - -
Pumo4g01163 161 Gene3D - 82 156 - -
Pumo4g01163 161 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Pumo4g01163 161 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Pumo4g01163 161 Pfam EF-hand domain pair 11 72 IPR002048 GO:0005509
Pumo4g01163 161 Pfam EF-hand domain pair 86 148 IPR002048 GO:0005509
Pumo4g01163 161 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01163 Pumo-Chr4 14894195 14895058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01163 9 160 EF-hand Containing Proteins AT1G18530 78.289 1.14e-85 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01163 K13448 - gmx:100795885 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01163 4 14894195 14895058 Pumo4g01163 4 14894195 14895058 ECH