Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00666 ATGTCGAAAATTGAAGGTGGTAAAAAGAGTGCTGAAGAGGAGAACAACTTGTTATTAAAAGACGTTGAAACCATAAACAAAAGCTCTTCCACGAATTCAACATCTTCCAAATCAAAGTCTAAAGCTAGCAAAGAAGATAATTTGCGCAAGGATAAGAAGTCCAGATGGAGTTGGAAGCCATTGAAGGCCCTTTCCTTCACCCGCAATAAGAAGTTTAATTGTAGTTTTTCTGTCCAAGTCCATTTGATTGAAGGGTTGCCTTCGAGTTTCAATGATTCTAGCCTTTGTGTGTATTGGAAGAGGAAGGATGCACTTTTGGCAACCCCTCCAGCCAAGGTGATTCAAGGTGTTGCTGAGTTTCAAGACATTTTGACTCACACATGCTCAATCTGTGGAAGTAGAAGTGGACCCCATAATTCTGCTAAATATGAAGCCAAGCATTTTCTGCTCTATACTTCTGTGCCTGGTACCCCAGAACTTGATTTGGGGAAGCACCGGGTGGATCTCACAACATTGCTTCCTCTCACACTGGAAGAGCTTGAAGAGGAGAAAAGCTCAGGAAAATGGACTACAAGTTTTATACTATCAGGAACTGCAAGGGGTGCAGTAATGAATGTCAGTTTTGGGTATGTGATTGTTGGTGATAATGCTGGTGCTACCAAAGACAACCTTGATGCTCCTCCTAATGTATTCACTTCCAAGGAAAATAGCATGCCTTTGATGGACCCGGATATAAAATCTAGCCAGGCTGGCAGGAGTGTTAGACGTACTGAAAGTTTGCCAAGCTTTATCAATCATAATTATTCATCTCAAAATGTAGATGAGGTGAAGGATCTTCATGAGGTGTTGCCATCATCAAAATTAGCACGAGCCAGCTCAGTAGACATTTTATATAAGGAATTTGATGAAGAAAAGAGTTGTAGTCCTCTGCATGATAAACCCGAACTTGAAGTATTTAAAGAAAATATCGATCCGATCAAACCAGCTGTCTATTCTTCATCTGATAGTGTAAAAGAAAAGCCAGAAGAGAATCCATGTAATGAAGGAAAAACATGTAATCTGGACCATGACAGACCTGAATTTGATGTGTTTCAAGAAATCCTGGAGACAGTTAAGCCAAATGATTATCCTTTACCTGATTCTGGAATAGAAAATTTCGAAGAGTGTGAAGGTAATGGATTTTCTGTTGTTGATCAGGGCGTCGAATTTTCATCAAATGAACGTGTTAAACTAGAGGAATCCATCATAAAAGCTGTTATTGATGCCTATACAGTCGATAGTACTTGGACTCTTGATACTGATGGTATTCAAGTATCTCTTCAAGACAGTGCTAAACAGGATTCCCAGAATGAACTAAATGATAGTTCTTGGGAAAGCGCTGTGGTACATGAATTGTCTAACAAAAAGGATGACTTATGCACGAAAGAACTTATACTGCAAGAACTAGAATCAGCTTTAAATAGTGTCTCAGAGTTGGAGACAGTGGCAATGGAATCTCCCATGGAAGCCAAATCTGAATACAGGTTGAGAAAGTCACATAGCTCGGATGATGTTACAGAATCAGTTTCCAGTGATTTTTTAAGTATGCTAGGCTTAGACCATAGTCCAATGGGTTTGAGTTTTGAAAGCGAACCTGAGTCTCCAAGAGAGCGCCTTTTAAGACAATTTGAGAAGGAAGCTCTGTCCGGGGGCTTCTCTTTGTTTGATTTTGACATAGGCAATGATACTGAAGCAGATGATGGTTATGATGCTTCTTTTGGATTCGAGCAGAGGAAGTTCTTTGCAGGTATTAAACCATCATCCTCATTGCCAGATTTGCAGAAAGTGCATCTAATTGAGTCTCAGGATGTGAGGAGCAAACAGAAGGTCCATATGCTAGAAAACTTGGAAACAGAAGCCTTAATGCGTGAATGGGGTTTGAATGAGAAGGATTTTCAGCATTCTCCTCAAAAAGATTATAATGGTTTTGGAAGTCCAATGTATTTTCTACCTGAAGAGCCTCTACCATTACCTCCTCTGGCAGAGGGGTTAGGTCCTTTTCTTCAGACCCAAGATGGGGGGTTTCTACGGTCAATGAATCCCTCACTTTTCAGGAATAGTAAAAGTGGTGGGACATTAATCATGCAGGTTTCCAACCCCGTGGTTATGCCGGCTGAAATGGGTTCTGGGATAATGGAGATTTTGCAGTGTTTGGCTTCAGTGGGAATTGAAAAGCTTTCCCTGCAGGCAAACAAGTTAATACCTCTGGAAGATATCACAGGGAAGACAATGCAACAAATATCAAGGGAAGCAAAACCAGTCTTGGAGGGAACACACAGGCAATATCATTTGCAGGATGATTTGGAGACAAGGCAAGATTCTCCTTGCGCGCAAAGGGGCTTGAAAGGAACATTATCTGGTGGACTAAAGTCTGATAAGTTTAGTTCATGTTCAGTTGGCAACCAGAGAGGCTCAGAGTTTGTTTCATTGGATGATCTTGCACCATTAGCTATGGACAAAATTGAAGCACTTTCACTGGAGGGTTTGAGAATACAATCTGGGATGTCGAATGAGGATGCGCCATCAAACATCATTGCACAATCCTTTGGGGACGTTTCAGCTCTCCAAGGCAAGGGGGTTAGTATCAGTGGTTCCCTTGGCTTGGATGGAGCTGGTGCCTTGCAGTTATTGGATGTAAAAGACAGCAGCAGTAGTGATGGTGTTGATGGGATAATTGGCCTTTCATTAACTCTTGATGAATGGATGAAGTTGGATTCTGGTGAGATTGATGATGATATAAATAATATTAGTGAGCATACTTCAAAACTTCTTGCTGCCCATCATGCAAACTCTTTTGACATAATTGGTGGGAGTTCAAAGGGAGACAGGAAACAAGGCAAAAACTCAGGCAGGAAATGTGGTTTGTTGGGAAACAATTTCACAGTAGCTCTGATGGTGCAGCTTCGTGATCCAATGAGAAACTATGAGCCAGTTGGAACACCAATGCTTTCTCTGATACAAGTTGAGAGAGTGTTTGTCCCACCAAAGCAAAAGATTTATAGGCGTGTGTCTGAGGCAGGGAACAATAATGATGAGGATGATGAGTGTGAAATAGTAGCCAACAAAGAAGAGGCCATTCCTCAGTTCAGAATTACAGAAGTACATGTTGCAGGTCTGAAGACTGAGCCTCACAAAAAGTTTTGGGGCACTTCAAAACGACAGCAACAACAGCAGTCTGGTTCCCGGTGGTTGATTGCTAATGGAATGGGGGAGAGCAATAAGAATCCATTCATAAAGTCAAAGGGTGTATCTAAATCTAGTGCTCCAATCACCAACACAAACGTGCAACCCGGTGACACATTGTGGAGCATATCATCTCGTATTTATGGTACTGGAACCAGATGGAAGGAATTGGTAGAACTAAATCCACATATAAGAAATCCCAATATCATTATACCAAATAAAACTATAAGAGTGCGTTGA 3462 0.4125 MSKIEGGKKSAEEENNLLLKDVETINKSSSTNSTSSKSKSKASKEDNLRKDKKSRWSWKPLKALSFTRNKKFNCSFSVQVHLIEGLPSSFNDSSLCVYWKRKDALLATPPAKVIQGVAEFQDILTHTCSICGSRSGPHNSAKYEAKHFLLYTSVPGTPELDLGKHRVDLTTLLPLTLEELEEEKSSGKWTTSFILSGTARGAVMNVSFGYVIVGDNAGATKDNLDAPPNVFTSKENSMPLMDPDIKSSQAGRSVRRTESLPSFINHNYSSQNVDEVKDLHEVLPSSKLARASSVDILYKEFDEEKSCSPLHDKPELEVFKENIDPIKPAVYSSSDSVKEKPEENPCNEGKTCNLDHDRPEFDVFQEILETVKPNDYPLPDSGIENFEECEGNGFSVVDQGVEFSSNERVKLEESIIKAVIDAYTVDSTWTLDTDGIQVSLQDSAKQDSQNELNDSSWESAVVHELSNKKDDLCTKELILQELESALNSVSELETVAMESPMEAKSEYRLRKSHSSDDVTESVSSDFLSMLGLDHSPMGLSFESEPESPRERLLRQFEKEALSGGFSLFDFDIGNDTEADDGYDASFGFEQRKFFAGIKPSSSLPDLQKVHLIESQDVRSKQKVHMLENLETEALMREWGLNEKDFQHSPQKDYNGFGSPMYFLPEEPLPLPPLAEGLGPFLQTQDGGFLRSMNPSLFRNSKSGGTLIMQVSNPVVMPAEMGSGIMEILQCLASVGIEKLSLQANKLIPLEDITGKTMQQISREAKPVLEGTHRQYHLQDDLETRQDSPCAQRGLKGTLSGGLKSDKFSSCSVGNQRGSEFVSLDDLAPLAMDKIEALSLEGLRIQSGMSNEDAPSNIIAQSFGDVSALQGKGVSISGSLGLDGAGALQLLDVKDSSSSDGVDGIIGLSLTLDEWMKLDSGEIDDDINNISEHTSKLLAAHHANSFDIIGGSSKGDRKQGKNSGRKCGLLGNNFTVALMVQLRDPMRNYEPVGTPMLSLIQVERVFVPPKQKIYRRVSEAGNNNDEDDECEIVANKEEAIPQFRITEVHVAGLKTEPHKKFWGTSKRQQQQQSGSRWLIANGMGESNKNPFIKSKGVSKSSAPITNTNVQPGDTLWSISSRIYGTGTRWKELVELNPHIRNPNIIIPNKTIRVR 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00666 1153 SUPERFAMILY LysM domain 1107 1152 IPR036779 -
Pumo4g00666 1153 MobiDBLite consensus disorder prediction 22 51 - -
Pumo4g00666 1153 Pfam LysM domain 1108 1152 IPR018392 -
Pumo4g00666 1153 SMART LysM_2 1105 1153 IPR018392 -
Pumo4g00666 1153 MobiDBLite consensus disorder prediction 232 252 - -
Pumo4g00666 1153 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1147 IPR039614 -
Pumo4g00666 1153 CDD LysM 1108 1152 IPR018392 -
Pumo4g00666 1153 MobiDBLite consensus disorder prediction 22 38 - -
Pumo4g00666 1153 Coils Coil 8 28 - -
Pumo4g00666 1153 Gene3D LysM domain 1099 1153 IPR036779 -
Pumo4g00666 1153 ProSiteProfiles C2 NT-type domain profile. 64 212 IPR019448 -
Pumo4g00666 1153 ProSiteProfiles LysM domain profile. 1104 1152 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00666 Pumo-Chr4 8696996 8701236 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00666 - - vra:106766502 1428.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00666 4 8696996 8701236 Pumo4g00666 4 8696996 8701236 ECH
Pumo4g00666 4 8696996 8701236 Pumo2g01671 2 31384736 31386443 PCT