Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00642 ATGCTACCCTTCAACAAAACTACCCTAACACCAAACCCCCTCCATCCCACTCCCACACCCACACCCAATCAACACCAACAACAACAACAACCACATCCTTCTTCTTCTTCCTCTATGGAATCGCTTCCCTCACTCATGACCACCGCTAATCCAATTCCGAATCTTAATTCCCCACCCTCCCTTCCTCCCAACGGGTTTGGGGATTCCGATTCCGACATTGACGCCCTCATCGACAGTTTCTTCGACCAACCTAACCCTCAATTGCCCTCTCTCCCTCGCTACGGATCCACCAGTAACGCCAACAGAGACTCTCTCAAGAGAGCAATTGACGACAACGCCCTCGATTATTTCGACACTGCCATATCCATCAAGCGCGGCAGGATTAACAATGTCACCGACGACGGTGATCAGCACGCCAGTTTCGAAATTGAAAACCCTACTTCTTCTTCTCTCTCCCAGGATCGAGGACAACACAGTGGTAACAATGGAGAGGTTGACGGTGATAATAATTTTCACGGAGGAGAAGAGAATAGGAAACAGCCACTGTTTCAAATTGATTTTATATCTAACGCTCTTCGTGAAGCCGAATTAGGTTTAGCGCAGAATTCAGACGATAACGCGAACCTTGACGACATGGAACCTGAGGATGTTAATGTACGGCATATACCAATGAGTTTTTACAGAAGGATTAGGAACATGGAACGTTTCCGAGTGATAGCGAAGGAAAACGCGACTCGCTATGCTCGATTCACGGCCTCGGAGGTGGTTGGAGATGAAGGCCCATCATCATCTCCTACTCCTCAAGCAATTGACGATTCCACAACTCCGTTTTCGATCGCAATGAAGGCGATCAAAGATCGAGCAATGAAGAAGAAGGTGTGTGAAACCTGGGTTGCGAAGAGGAATCAACAAGGGGAGAAGAGGTTTTTGGTGCCCTCTCTTCAAGAACTGTGCCTTGAAATTCTTGCGGACAATGCTGATGCAATGGTTTCGCTTGAGGGTGTCCCGGATGAGTTGAGACACAAGCTTTGCAAGCTGCTCTGTGACTCAAGAAAGATGAACGGTCGATTTCTTGAGCTTCTTCTCAGTGGGTCTCCCACGGAGATTCGATTAAAAGACTGCTCTTGGTTGACGGAGGAACAGTTTGCCAAATCTTTTCAAATGTGTGACACTAGAAGATTGGAGGTGCTGCAACTTGACCAGTGTGGAAGGTGTATACCTGATTATGCATTACTTGGTACTTTGAGACAGTCACCAAGGTGGTTGCCGAAATTAATTACTCTGTCCCTCAGTGGTGCGTGCCGTCTGTCAGATAAGGGGTTGCATGTGCTAGTTTCTTCCGCCCCAGCACTGAGATCCATTAATCTAAGCCAGTGCTCCCTTCTCTCATCTGCCAGTATTAACATTTTGGCCGATTCATTGGGATCCCTTCTGAAAGAGTTATATCTTGATGATTGCCTAATGATTGATGCTGCACAAATTGTGCCAGGACTGAAGAAACTTGAAAATTTAGAGGTGTTGTCATTGGCTGGCATTCAAACTGTCTCTGATGAATTTATCAAGGATTACATCATTGCATGTGGTTACAACATGAAGGAGCTTATTTTAAAAGACTGTAGAAAATTGACTGATGCATCAATAAAAGTCATTGCTGAAAACTGTCCTGGGTTGTGTGCACTTGATCTTATGCACTTGGACAAATTGACAGATTTATCCTTAGGATATCTTACAAATAGTTGTCGAGCACTTCATACATTGAAGCTCTGCCGCAATCCATTCAGTGATGAAGCAATTGCTGCATTCTTGGAGATTACTGGAGAGTCCTTGAAAGAACTTTCACTTAATAATATTAAGAAGGTTGACCACCACACAACCTTATCACTTGCTAGGCATGCAAAAAATTTGCATACTCTAGATCTCTCTTGGTGCCGGAATTTGACAGACAACGAGTTGGGTTTCATTGTAGATAGCTGCTTCTCACTGAGGTTGCTTAAACTTTTTGGATGCTCACTGGTGACAGATGTTTTTCTGAATGGGCACTCAAACCCAGAGATTCAGATCCTTGGATTGAAGATGTCTCCTTTACTGCAACATGTCAAAGTGCCTGAACCTTATCAAGGTCCTTTGCGTTATTCACCAGTTTCAGTAGATTTAATATAA 2160 0.4454 MLPFNKTTLTPNPLHPTPTPTPNQHQQQQQPHPSSSSSMESLPSLMTTANPIPNLNSPPSLPPNGFGDSDSDIDALIDSFFDQPNPQLPSLPRYGSTSNANRDSLKRAIDDNALDYFDTAISIKRGRINNVTDDGDQHASFEIENPTSSSLSQDRGQHSGNNGEVDGDNNFHGGEENRKQPLFQIDFISNALREAELGLAQNSDDNANLDDMEPEDVNVRHIPMSFYRRIRNMERFRVIAKENATRYARFTASEVVGDEGPSSSPTPQAIDDSTTPFSIAMKAIKDRAMKKKVCETWVAKRNQQGEKRFLVPSLQELCLEILADNADAMVSLEGVPDELRHKLCKLLCDSRKMNGRFLELLLSGSPTEIRLKDCSWLTEEQFAKSFQMCDTRRLEVLQLDQCGRCIPDYALLGTLRQSPRWLPKLITLSLSGACRLSDKGLHVLVSSAPALRSINLSQCSLLSSASINILADSLGSLLKELYLDDCLMIDAAQIVPGLKKLENLEVLSLAGIQTVSDEFIKDYIIACGYNMKELILKDCRKLTDASIKVIAENCPGLCALDLMHLDKLTDLSLGYLTNSCRALHTLKLCRNPFSDEAIAAFLEITGESLKELSLNNIKKVDHHTTLSLARHAKNLHTLDLSWCRNLTDNELGFIVDSCFSLRLLKLFGCSLVTDVFLNGHSNPEIQILGLKMSPLLQHVKVPEPYQGPLRYSPVSVDLI 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00642 719 FunFam DNA repair protein rhp7 isoform A 608 707 - -
Pumo4g00642 719 SUPERFAMILY RNI-like 369 676 - -
Pumo4g00642 719 FunFam RNI-like superfamily protein 304 522 - -
Pumo4g00642 719 Gene3D Ribonuclease Inhibitor 601 700 IPR032675 -
Pumo4g00642 719 SMART LRR_CC_2 528 553 IPR006553 -
Pumo4g00642 719 SMART LRR_CC_2 580 604 IPR006553 -
Pumo4g00642 719 SMART LRR_CC_2 632 657 IPR006553 -
Pumo4g00642 719 SMART LRR_CC_2 554 579 IPR006553 -
Pumo4g00642 719 SMART LRR_CC_2 448 473 IPR006553 -
Pumo4g00642 719 SMART LRR_CC_2 422 447 IPR006553 -
Pumo4g00642 719 SMART LRR_CC_2 606 631 IPR006553 -
Pumo4g00642 719 Gene3D Ribonuclease Inhibitor 329 524 IPR032675 -
Pumo4g00642 719 PANTHER UNCHARACTERIZED 309 691 - -
Pumo4g00642 719 MobiDBLite consensus disorder prediction 21 54 - -
Pumo4g00642 719 MobiDBLite consensus disorder prediction 83 99 - -
Pumo4g00642 719 MobiDBLite consensus disorder prediction 134 176 - -
Pumo4g00642 719 MobiDBLite consensus disorder prediction 141 166 - -
Pumo4g00642 719 Gene3D Ribonuclease Inhibitor 525 600 IPR032675 -
Pumo4g00642 719 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00642 Pumo-Chr4 8458036 8462893 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00642 K15082 - gmx:100798274 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00642 4 8458036 8462893 Pumo4g00642 4 8458036 8462893 ECH
Pumo4g00642 4 8458036 8462893 Pumo2g01697 2 31879797 31884955 PCT