Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00502 ATGTCACACTCACAATATAGCAAGGTTGGATTTGGAGAGCATTCTGACCCTCAGATCATAACCCTTCTCAGATCCAACGACGTGGGTGGCCTCCAAATCTCCCTTCAAGATGGGGTGTGGATCCCAGTCTCCCCTGACCCCTCAGCATTCTATGTGAACGTGGGTGATGTACTAGAGGTAATGACAAATGGAAGATTTGTGAGCGTGAGGCACAGGGCTATGACGAACTCATACAAGTCTAGAATGTCAGTGGCATATTTTGGGGCTCCACCCCTCCATGCTACCATTGTTGCTCCCTCAGTTATGGTCACACCCCAGAGGCCCTCTCTCTTCCGACCATTCACTTGGGACGATTACAAGAAAGCCACTTACTCTCTCAGGCTTGGAGACACACGCATTCAACTTTTCACAAACTGCAAAGAAAAAGAATAA 432 0.4815 MSHSQYSKVGFGEHSDPQIITLLRSNDVGGLQISLQDGVWIPVSPDPSAFYVNVGDVLEVMTNGRFVSVRHRAMTNSYKSRMSVAYFGAPPLHATIVAPSVMVTPQRPSLFRPFTWDDYKKATYSLRLGDTRIQLFTNCKEKE 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00502 143 Gene3D - 2 121 IPR027443 -
Pumo4g00502 143 Pfam 2OG-Fe(II) oxygenase superfamily 3 88 IPR044861 -
Pumo4g00502 143 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 1 90 IPR005123 -
Pumo4g00502 143 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 8 123 - -
Pumo4g00502 143 SUPERFAMILY Clavaminate synthase-like 8 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00502 Pumo-Chr4 6679703 6681411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00502 9 131 Glycosyltransferase AT5G59530 37.302 1.57e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00502 K04125 - gmx:100783917 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00502 4 6679703 6681411 Pumo4g00502 4 6679703 6681411 ECH