Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00469 ATGTGTCCTTCCGGTCGCACCTTCCGCCCTCACGCCCCCTCCTCCTCCGATTTCCGGCCGGCATTCGACGTCCTCGACGCCGACCGCGACGGCAAAATAAGCCGCGAGGACCTCCGCGCCTTCTACGCGGGCGTGCAAGGCGGAGTCGTCGGCGGCGGAGACGACGTTATCGGGGCAATGATGACGGTGGCCGACACCAACAAGGATGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGGTCTCGGGGAACGCCGAGAGAAAACCCGTGGGGTGTGGGGCCATGGAGGACGTGTTCAGGGTCATGGACAAGGACGGCGACGGCAAGCTCAGCCACCACGACTTGAAGTCTTACATGGCCTCCGCTGGCTTTCCGGCCACCGACGATGACATCAGCGCCATGATCCGATTCGGCGGCGGCGACCAAAACGGCGGCGTCACGTTCGATGGTTTGCTTCGTATATTAGCGCTTGATTCTTCCGCCGCTAATTAA 492 0.624 MCPSGRTFRPHAPSSSDFRPAFDVLDADRDGKISREDLRAFYAGVQGGVVGGGDDVIGAMMTVADTNKDGFVEYEEFERVVSGNAERKPVGCGAMEDVFRVMDKDGDGKLSHHDLKSYMASAGFPATDDDISAMIRFGGGDQNGGVTFDGLLRILALDSSAAN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00469 163 Pfam EF hand 96 121 IPR002048 GO:0005509
Pumo4g00469 163 Gene3D - 8 161 - -
Pumo4g00469 163 ProSiteProfiles EF-hand calcium-binding domain profile. 52 87 IPR002048 GO:0005509
Pumo4g00469 163 SMART efh_1 56 84 IPR002048 GO:0005509
Pumo4g00469 163 SMART efh_1 130 158 IPR002048 GO:0005509
Pumo4g00469 163 SMART efh_1 17 45 IPR002048 GO:0005509
Pumo4g00469 163 SMART efh_1 94 122 IPR002048 GO:0005509
Pumo4g00469 163 Pfam EF-hand domain pair 18 81 IPR002048 GO:0005509
Pumo4g00469 163 CDD EFh 17 82 IPR002048 GO:0005509
Pumo4g00469 163 ProSitePatterns EF-hand calcium-binding domain. 26 38 IPR018247 -
Pumo4g00469 163 ProSitePatterns EF-hand calcium-binding domain. 65 77 IPR018247 -
Pumo4g00469 163 SUPERFAMILY EF-hand 17 155 IPR011992 -
Pumo4g00469 163 CDD EFh 96 156 IPR002048 GO:0005509
Pumo4g00469 163 PANTHER CALCIUM BINDING PROTEIN 95 152 - -
Pumo4g00469 163 ProSitePatterns EF-hand calcium-binding domain. 103 115 IPR018247 -
Pumo4g00469 163 ProSiteProfiles EF-hand calcium-binding domain profile. 13 48 IPR002048 GO:0005509
Pumo4g00469 163 ProSiteProfiles EF-hand calcium-binding domain profile. 95 125 IPR002048 GO:0005509
Pumo4g00469 163 FunFam Calcium-binding protein CP1 11 81 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00469 1 155 EF-hand Containing Proteins AT5G49480 55.828 1.02e-54 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00469 K02183 - gmx:100527230 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00469 4 6229675 6230528 Pumo4g00469 4 6229675 6230528 ECH