Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00462 ATGGAAAATACGAATGAGTTCGGACACTTTGACGTCGTTTCAGATGATGCAGATCACCACTTTCTAGCTTCAAACAACGGAAAATGCTTCAACGATTCAAAGAGTGAAGTCTACCGCACCATCATGAAAGAGTGGAAAATCCTCGAGAAGAACTTACCCGAATCCATCTACGTGCGTGTCTACGAGCGACGCATTGATCTAATGAGGGCCGTGATCGTAGGTGCTGCGGGTACACCGTACCACGATGGTCTCTTCTTCTTCGACATTGCTTTTCCCTCTGATTACCCGAGAAATCCCCCAAAGCTGCATTACCACTCGTTCGGGTACCGACACAACCCAAATCTTTACAAGAACGGCAGAGTGTGCTTGAGCCTGCTGAACACGTGGTTCGGGAAAAAGACGGAGCAGTGGGACCCATCTGGGTCGACGATGCTCCAAGTGTTGCTCTCCATTCAAGCACTCGTGCTGAACGAGAAGCCATTCTATAACATTAACGAGCCTCATGCTGATGCCTCCGAGAGGAGCTCACGTGTCTACAACGAGAACGTGTTCCTTATTACTTGCAGCACCTCCTTTCATCTGCTTCAGAGGCCACCCTGGAACTTTGAAGCATTTGTCCGCGCCCATTTTCGCGAGCGCGCGTTTCAGATTCTCTCGGCCTGCAGCGAGTACGCGAATGGGCGCGTGATAGTTGGGTATTACTCTTGTGACTCGCGTCCTTCGTCAATGGTACATGTTTCACGGAGTTTCAAGAAGCAGATGATAGAGTTTTACCCTCGGCTTCTTCAAGCGTTTCGACGAAACGGATCTTCTCTGGAGGATTTGGTCGAACACTTGGAGCTCGAGAGGAAGCATTCCGAAAACAAAAGCAGTGGAATCTTCAAGAAGGTCAGGGAAAAGATCAAAAAGGCTTTCGGATTTAAGAAAAACAAAGGACAACAGAAGTCTTGA 951 0.4858 MENTNEFGHFDVVSDDADHHFLASNNGKCFNDSKSEVYRTIMKEWKILEKNLPESIYVRVYERRIDLMRAVIVGAAGTPYHDGLFFFDIAFPSDYPRNPPKLHYHSFGYRHNPNLYKNGRVCLSLLNTWFGKKTEQWDPSGSTMLQVLLSIQALVLNEKPFYNINEPHADASERSSRVYNENVFLITCSTSFHLLQRPPWNFEAFVRAHFRERAFQILSACSEYANGRVIVGYYSCDSRPSSMVHVSRSFKKQMIEFYPRLLQAFRRNGSSLEDLVEHLELERKHSENKSSGIFKKVREKIKKAFGFKKNKGQQKS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00462 316 Coils Coil 262 282 - -
Pumo4g00462 316 FunFam Putative ubiquitin-conjugating enzyme E2 38 1 268 - -
Pumo4g00462 316 Pfam Ubiquitin-conjugating enzyme 41 183 IPR000608 -
Pumo4g00462 316 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 36 192 IPR000608 -
Pumo4g00462 316 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 6 270 - -
Pumo4g00462 316 CDD UBCc 38 187 IPR000608 -
Pumo4g00462 316 Gene3D Ubiquitin Conjugating Enzyme 1 274 IPR016135 -
Pumo4g00462 316 SMART ubc_7 39 192 - -
Pumo4g00462 316 SUPERFAMILY UBC-like 33 200 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00462 Pumo-Chr4 6069766 6070716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00462 3 269 Miscellaneous Gene Families AT2G33770 50.183 5.88e-78 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00462 K10581 - gmx:100791343 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00462 4 6069766 6070716 Pumo4g00462 4 6069766 6070716 ECH