Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00450 ATGAACGCCCTCCCTTCGTCTTCCTCTTCCACCTTCACTTTCTTCACTCAGTCCAAGAGCCCCAACTATCTCTTCAAGTTCACACATAAAGTACCCATTTTACCCCTACACTCACCTGCCCCGTGTTGCTCACTCAGTGAATCATCCTCCTCGTCGACCACGGTGCTGGACAAAAATGCCCTTTCGTCCGAACTGAATTCCCGCAATGCAGCTTCGCCAGAATACTCAAGTTCCGAGGAAGTCCTTGAGGTTCGCCGGCCGGTGACGGATTTTTCCGGCGAGGAGGAAGAAGTGGAGGAGGCAGAGGAAGAAGATGATGACCCGAATGCTTCGGTGATCGACGCGGGACTCGCGAGATTCGCGAAGAAGATGCCGATGTTTGAGCCGGAGAGGGTGGAATCCAAAGAGAGGCCCCTGGCAATTAATTTGGACTTGGCGTTATACAGGGCGAAGCTTTTGGCTAGAAGAACCTTTCAGTATGGAGAAGCAGAGGCATTACTTCGAAAGTGTATAAGCTATTGGCCGGAAGATGGTCGACCTTACGTGGTACTTGGAAAGATTTTGAGCAAGCAATCCAAAAGAGATGAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACTCAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTTGAAATGCAAATGGGAAATATCAGGAGAGCAAGAGAGTTGTTTGATGCTGCCACAGTTGCTGATAAGAGGCATGTTGCTGCTTGGCATGGATGGGCAGTTCTCGAATTAAAGCAGGGAAATCTAAACAAGGCAAGGAGTCTACTTGGTAAAGGTCTTCAATATTGTGGACAGAATGAGTACATATACCAAACACTAGCACGGCTTGAAGCTAGAGCAAAAAGATATCAGCAGGCTCGATATTTATTCAATCAGGCCACTAAGTGTAATCCTAATAGTTGTGCTAGTTGGCTTGGTTGGGCGCAAATGGAGGTGGAACAGGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCTAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCGTTTTTGAAGCTAGCATGGGCAACATTGACAAGGGAAGAAAACTTTTAAAGATAGGTCATAATCTAAATCCGAGGGATGCTGTTCTACTTCAATCTCTTGCTTTATTAGAATACCAACACTCAACTGCAAACCTTGCTCGAGTTTTGTTCAGGAGAGCATCTGAATTGAATCCAAGGCATCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGGAACTTGAATAAAGCCAGAAAATTATACCAAAAAACTTTAGCAATTGATCAGAACAGTGAAACTGCTGCCAGATGTCTCCAGGCTTGGGGTGTTTTGGAGCATAGGGCTGGCAATCTTTCAGCTGCTCGTAGATTATTTAAATCATCGTTGAATATAAATTCTCAGAGTTATGTGACATGGATGACTTGGGCATCAATGGAGGAAGATCAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAATCTCTATTTCCAACAGCGCACAGAAGTTGTAGATGATGCTTCATGGGTTATGGGATTCCTAGGTATCTTAGACCCGGCCATTGACAGTTTAAAGAGAATCCTCAAGCTGAACCCAAATTCGTACAACATGCCACTGGATTCTTTGAGGAACGTTGCGGGAACAAATAAAAACAGAGATGATTTTTCTAGTGACGATGAGGATGATGATGCAAATGGTAAAAGTGACTTTGATTTGGATGCTTTCATTAAGCAAAAGCTAACCTTAGATTTGTCCAATCTAGAAGTTCAGTTGGAAACACCAAAGTTTTATTCTGTGAAGAGAAGCACGTCTCCTAGAAAGATATGGCGACGATCAATTAATAAAATTGCCGAAGTGCAAGTCACACAGTAA 1926 0.4444 MNALPSSSSSTFTFFTQSKSPNYLFKFTHKVPILPLHSPAPCCSLSESSSSSTTVLDKNALSSELNSRNAASPEYSSSEEVLEVRRPVTDFSGEEEEVEEAEEEDDDPNASVIDAGLARFAKKMPMFEPERVESKERPLAINLDLALYRAKLLARRTFQYGEAEALLRKCISYWPEDGRPYVVLGKILSKQSKRDEAREIYEKGCQATQGENAYIWQCWAVLEMQMGNIRRARELFDAATVADKRHVAAWHGWAVLELKQGNLNKARSLLGKGLQYCGQNEYIYQTLARLEARAKRYQQARYLFNQATKCNPNSCASWLGWAQMEVEQENYRAARKLFEKAVQASPKNRFAWHVWGVFEASMGNIDKGRKLLKIGHNLNPRDAVLLQSLALLEYQHSTANLARVLFRRASELNPRHQPVWFAWGWMEWKEGNLNKARKLYQKTLAIDQNSETAARCLQAWGVLEHRAGNLSAARRLFKSSLNINSQSYVTWMTWASMEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLGILDPAIDSLKRILKLNPNSYNMPLDSLRNVAGTNKNRDDFSSDDEDDDANGKSDFDLDAFIKQKLTLDLSNLEVQLETPKFYSVKRSTSPRKIWRRSINKIAEVQVTQ 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00450 641 FunFam PsbB mRNA maturation factor Mbb1 386 534 - -
Pumo4g00450 641 FunFam Uncharacterized protein 128 385 - -
Pumo4g00450 641 ProSiteProfiles TPR repeat profile. 281 314 IPR019734 GO:0005515
Pumo4g00450 641 ProSiteProfiles TPR repeat profile. 315 348 IPR019734 GO:0005515
Pumo4g00450 641 MobiDBLite consensus disorder prediction 62 76 - -
Pumo4g00450 641 MobiDBLite consensus disorder prediction 62 108 - -
Pumo4g00450 641 Gene3D Tetratricopeptide repeat domain 386 557 IPR011990 GO:0005515
Pumo4g00450 641 Gene3D Tetratricopeptide repeat domain 145 385 IPR011990 GO:0005515
Pumo4g00450 641 SMART tpr_5 247 280 IPR019734 GO:0005515
Pumo4g00450 641 SMART tpr_5 315 348 IPR019734 GO:0005515
Pumo4g00450 641 SMART tpr_5 454 487 IPR019734 GO:0005515
Pumo4g00450 641 SMART tpr_5 383 416 IPR019734 GO:0005515
Pumo4g00450 641 SMART tpr_5 281 314 IPR019734 GO:0005515
Pumo4g00450 641 SMART tpr_5 417 450 IPR019734 GO:0005515
Pumo4g00450 641 SMART tpr_5 349 382 IPR019734 GO:0005515
Pumo4g00450 641 SMART tpr_5 178 211 IPR019734 GO:0005515
Pumo4g00450 641 SMART tpr_5 213 246 IPR019734 GO:0005515
Pumo4g00450 641 SUPERFAMILY TPR-like 81 393 IPR011990 GO:0005515
Pumo4g00450 641 MobiDBLite consensus disorder prediction 93 108 - -
Pumo4g00450 641 MobiDBLite consensus disorder prediction 559 583 - -
Pumo4g00450 641 SUPERFAMILY TPR-like 319 566 IPR011990 GO:0005515
Pumo4g00450 641 Pfam Tetratricopeptide repeat 287 348 - -
Pumo4g00450 641 Pfam Tetratricopeptide repeat 222 271 - -
Pumo4g00450 641 SMART hat_new_1 468 500 IPR003107 GO:0006396
Pumo4g00450 641 SMART hat_new_1 227 259 IPR003107 GO:0006396
Pumo4g00450 641 SMART hat_new_1 397 429 IPR003107 GO:0006396
Pumo4g00450 641 SMART hat_new_1 192 225 IPR003107 GO:0006396
Pumo4g00450 641 SMART hat_new_1 363 395 IPR003107 GO:0006396
Pumo4g00450 641 SMART hat_new_1 261 293 IPR003107 GO:0006396
Pumo4g00450 641 SMART hat_new_1 329 361 IPR003107 GO:0006396
Pumo4g00450 641 SMART hat_new_1 295 327 IPR003107 GO:0006396
Pumo4g00450 641 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 22 630 IPR044624 GO:0003729|GO:0006397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00450 - - gmx:100801939 1129.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00450 4 5960594 5965377 Pumo4g00450 4 5960594 5965377 ECH